Bioconductor DesignMatrix

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subsettingdata edgeR designmatrix

updated 4 weeks ago by Gordon Smyth 50k • written 5 weeks ago by prity6459 • 0

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192

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limma designmatrix

updated 6 weeks ago by Gordon Smyth 50k • written 6 weeks ago by avery • 0

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1.0k

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DESeq2 designmatrix edgeR limma tidybulk

updated 16 months ago by Michael Love 42k • written 16 months ago by aditya.m ▴ 10

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1.2k

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R designmatrix edgeR limma model.matrix

17 months ago Abdul ▴ 20

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DESeq2 limma modelmatrix edgeR designmatrix

updated 2.6 years ago by Gordon Smyth 50k • written 2.6 years ago by rebecca.lea.johnston • 0

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1.1k

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designmatrix deseq2 DESeq2

updated 2.6 years ago by swbarnes2 ★ 1.4k • written 2.6 years ago by OST • 0

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designmatrix RNA-seq limma

updated 3.1 years ago by Gordon Smyth 50k • written 3.2 years ago by athief ▴ 20

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632

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designmatrix DifferentialExpression edgeR RNAseq

3.3 years ago nageshprabhu.k ▴ 10

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957

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MutlipleFactors DesignMatrix edgeR

3.3 years ago Debayan ▴ 20

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925

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edgeR pairedsamples designmatrix

3.3 years ago sfidemw • 0

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697

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deseq2 miRNASeq designmatrix Batch

updated 4.2 years ago by Michael Love 42k • written 4.2 years ago by anshulmbi • 0

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862

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edger r differentialanalysis rnaseq designmatrix

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by Beginner ▴ 60

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1.2k

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Limma designMatrix

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Keifa ▴ 10

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1.3k

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limma microarray designmatrix

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by nashchem • 0

14 results • Page 1 of 1

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Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res by jovel_juan ▴ 30

enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by ATpoint ★ 4.2k

SAF files must not have a header.

Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman by xuz • 0

Could you try the latest version (1.40.1) to see how it works, I am not able to replicate the error message on my computer here.

Comment: Not able to install any Bioconductor 3.18 package [unable to access index] by merv ▴ 120

Thanks! I can confirm it is working now - had been broken since sometime yesterday.

Comment: Errors in chromosome annotation-biomaRt by landenshanie ▴ 40

Thank you, I ran your exact code and it correct for Xist, however Ddx3y is still wrongly annotated to chr13 and, like your results, Dusp1 i…

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Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Seurat/DESeq2 - single cell RNA-seq differential expression

Seurat to SingleCellExperiment Converting error in MAC

Error when converting Seurat to SingleCellExperiment

Comment: unable to access bioconductor packages - qvalue installation failed...

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