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Showing :
DesignMatrix
•
reset
4
votes
6
replies
1.9k
views
Question on creating right design matrix in edgeR
R
designmatrix
edgeR
limma
model.matrix
3.2 years ago
Abdul
▴ 20
1
vote
2
replies
1.7k
views
multifactorial design matrix
designmatrix
RNA-seq
limma
updated 4.9 years ago by
Gordon Smyth
53k • written 4.9 years ago by
athief
▴ 20
2
votes
4
replies
2.1k
views
DESeq2/edgeR/limma help with most appropriate design matrix
DESeq2
limma
modelmatrix
edgeR
designmatrix
updated 4.3 years ago by
Gordon Smyth
53k • written 4.3 years ago by
rebecca.lea.johnston
• 0
0
votes
2
replies
1.3k
views
DESEQ2: Error in checkFullRank(modelMatrix)
deseq2
miRNASeq
designmatrix
Batch
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
anshulmbi
• 0
0
votes
2
replies
1.7k
views
Help creating a paired sample design matrix in edgeR
edgeR
pairedsamples
designmatrix
5.0 years ago
sfidemw
• 0
2
votes
4
replies
1.6k
views
edgeR design matrix for multiple factors
MutlipleFactors
DesignMatrix
edgeR
5.0 years ago
Debayan
▴ 20
0
votes
1
reply
626
views
Deseq2 design matrix
DESeq2
Designmatrix
limma
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Neha
• 0
0
votes
2
replies
805
views
Advice needed: Using limma for differential pathway analysis with continuous disease progression scores
limma
DifferentialExpression
Designmatrix
14 months ago
Tadeoye
▴ 20
2
votes
6
replies
1.8k
views
Limma DesignMatrix, dropping terms
Limma
designMatrix
updated 7.6 years ago by
Aaron Lun
★ 29k • written 7.6 years ago by
Keifa
▴ 10
0
votes
2
replies
1.4k
views
How to create design matrix for differential analysis within the same cell-line samples?
edger
r
differentialanalysis
rnaseq
designmatrix
updated 6.8 years ago by
Aaron Lun
★ 29k • written 6.8 years ago by
Beginner
▴ 60
2
votes
4
replies
1.9k
views
design matrix for complicated experimental design in limma
limma
microarray
designmatrix
updated 9.5 years ago by
Aaron Lun
★ 29k • written 9.5 years ago by
nashchem
• 0
0
votes
3
replies
1.1k
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 22 months ago by
Gordon Smyth
53k • written 22 months ago by
prity6459
• 0
0
votes
3
replies
1.7k
views
DESeq2 Design Matrix Two Conditions and Two Treatments
designmatrix
deseq2
DESeq2
updated 4.3 years ago by
swbarnes2
★ 1.4k • written 4.3 years ago by
OST
• 0
0
votes
1
reply
651
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 22 months ago by
Gordon Smyth
53k • written 22 months ago by
avery
• 0
3
votes
5
replies
1.8k
views
Design for DE analysis in tidybulk
DESeq2
designmatrix
edgeR
limma
tidybulk
updated 3.0 years ago by
Michael Love
43k • written 3.0 years ago by
aditya.m
▴ 10
1
vote
0
replies
1.0k
views
Design Matrix for multiple variables in Edge R
designmatrix
DifferentialExpression
edgeR
RNAseq
5.0 years ago
nageshprabhu.k
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo
by
a2a2haa
• 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Answer: Bulk RNAseq analysis for
by
James W. MacDonald
68k
In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…
Comment: Jobs at Ensembl
by
frostybuddyy
• 0
I found your blog "Jobs at Ensembl" quite fascinating! The way you talked about the convergence of bioinformatics and data science in emplo…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics
by
mudasarnaeem2020
• 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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