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champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
16 months ago arisarkar88 • 0
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Error while using champ.svd() function in subset of data
ChAMP methylationepic epicarray epigenomics
updated 4.9 years ago by ▴ 140 • written 4.9 years ago by ▴ 10
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Comment: Detection of reference genes by Deseq2 by Michael Love 37k
To clarify my last paragraph above -- despite our best efforts/methods, it is possible that we cannot determine from the counts alone what …
Comment: Issues installing DESeq2 package with R version 4.2.1 by lucabartolinimd • 0
Full thread below: > if (!require("BiocManager", quietly = TRUE)) + install.packages("BiocManager") Bioconductor version 3.15 (BiocMana…
Comment: Issues installing DESeq2 package with R version 4.2.1 by lucabartolinimd • 0
Hi, This is the code I ran: if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager:…
Comment: CHIPQC error regarding BiocParallel by Rory Stark ★ 4.4k
I've checked in another fix for this: `ChIPQC_1.32.2`.
Comment: dba.count() error when re-centering peaks by Rory Stark ★ 4.4k
I've checked in a fix for this (`DiffBind_3.6.3`). It had to do with specifying `minOverlap=0` in the initial call to `dba()`. Did you mea…
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Comment: Detection of reference genes by Deseq2
Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
Comment: SingleCellExperiment: Edit cluster IDs in colLabels
Comment: what should be our references when 2 samples which I compare are treated and the
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