Showing : ERCC • reset
1
vote
1
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1.0k
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Incorporating RUVg results into ImpulseDE2 model
ImpulseDE2 ImpulseDE ERCC RUVSeq
3.2 years ago • updated 3.1 years ago Mallory ▴ 10
3
votes
2
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3.3k
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Using the ERCC spike as a normalization factor for a custom algorithm
ERCC rna-seq edgeR tmm normalised values
updated 7.8 years ago by ★ 28k • written 7.8 years ago by • 0
27
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7
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16k
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Usability of ERCC spike-ins in standard RNAseq experiments
RNAseq deseq2 ercc
updated 8.2 years ago by ★ 3.8k • written 8.2 years ago by ▴ 30
16
votes
5
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8.0k
views
DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
limma voom deseq normalization ercc
updated 9.1 years ago by 52k • written 9.1 years ago by ▴ 120
8
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5
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5.6k
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edgeR and Normalization of RNAseq data using ERCC controls
edger ercc
10.1 years ago John ▴ 10
9
votes
4
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3.1k
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News: Experimental data package 'seqc'
seqc rsubread featurecounts subjunc ercc News
10.1 years ago Wei Shi ★ 3.6k
6 results • Page 1 of 1
Recent ...
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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Votes
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
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