Bioconductor ERCC

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1.3k

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ImpulseDE2 ImpulseDE ERCC RUVSeq

4.1 years ago • updated 4.0 years ago Mallory ▴ 10

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4.0k

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ERCC rna-seq edgeR tmm normalised values

updated 8.7 years ago by Aaron Lun ★ 29k • written 8.7 years ago by what_theheck24 • 0

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17k

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RNAseq deseq2 ercc

updated 9.0 years ago by Simon Anders ★ 3.8k • written 9.0 years ago by mbeckste ▴ 30

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8.5k

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limma voom deseq normalization ercc

updated 10.0 years ago by Gordon Smyth 53k • written 10.0 years ago by komal.rathi ▴ 120

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6.0k

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edger ercc

10.9 years ago John ▴ 10

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3.5k

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seqc rsubread featurecounts subjunc ercc News

11.0 years ago Wei Shi ★ 3.6k

6 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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