Showing : ERCC • reset
1
vote
1
reply
985
views
Incorporating RUVg results into ImpulseDE2 model
ImpulseDE2 ImpulseDE ERCC RUVSeq
3.1 years ago Mallory ▴ 10
3
votes
2
replies
3.2k
views
Using the ERCC spike as a normalization factor for a custom algorithm
ERCC rna-seq edgeR tmm normalised values
updated 7.8 years ago by ★ 28k • written 7.8 years ago by • 0
27
votes
7
replies
16k
views
Usability of ERCC spike-ins in standard RNAseq experiments
RNAseq deseq2 ercc
updated 8.1 years ago by ★ 3.8k • written 8.1 years ago by ▴ 30
16
votes
5
replies
7.9k
views
DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
limma voom deseq normalization ercc
updated 9.0 years ago by 51k • written 9.0 years ago by ▴ 120
8
votes
5
replies
5.6k
views
edgeR and Normalization of RNAseq data using ERCC controls
edger ercc
10.0 years ago John ▴ 10
9
votes
4
replies
3.1k
views
News: Experimental data package 'seqc'
seqc rsubread featurecounts subjunc ercc News
10.0 years ago Wei Shi ★ 3.6k
6 results • Page 1 of 1
Recent ...
Replies
Comment: Create Illmina bead summary data by Liu • 0
Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …
Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k
Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…
Comment: Deseq2 res Function by James W. MacDonald 67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Votes
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Awards • All
Popular Question to shepherl 4.1k
Popular Question to David R ▴ 90
Popular Question to Gordon Smyth 51k
Popular Question to sap275 ▴ 10
Popular Question to mhem ▴ 10
Locations • All
Germany, 3 minutes ago
Germany, 11 minutes ago
Wageningen University, Wageningen, the Netherlands, 21 minutes ago
France, 34 minutes ago
Algeria, 36 minutes ago
Traffic: 900 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6