Bioconductor ERCC

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1.1k

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ImpulseDE2 ImpulseDE ERCC RUVSeq

3.5 years ago • updated 3.4 years ago Mallory ▴ 10

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3.6k

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ERCC rna-seq edgeR tmm normalised values

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by what_theheck24 • 0

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16k

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RNAseq deseq2 ercc

updated 8.5 years ago by Simon Anders ★ 3.8k • written 8.5 years ago by mbeckste ▴ 30

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8.2k

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limma voom deseq normalization ercc

updated 9.4 years ago by Gordon Smyth 52k • written 9.4 years ago by komal.rathi ▴ 120

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5.8k

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edger ercc

10.3 years ago John ▴ 10

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3.2k

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seqc rsubread featurecounts subjunc ercc News

10.4 years ago Wei Shi ★ 3.6k

6 results • Page 1 of 1

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Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Votes

Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

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