Bioconductor ERCC

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963

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ImpulseDE2 ImpulseDE ERCC RUVSeq

3.1 years ago • updated 3.0 years ago Mallory ▴ 10

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3.2k

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ERCC rna-seq edgeR tmm normalised values

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by what_theheck24 • 0

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15k

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RNAseq deseq2 ercc

updated 8.1 years ago by Simon Anders ★ 3.8k • written 8.1 years ago by mbeckste ▴ 30

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7.9k

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limma voom deseq normalization ercc

updated 9.0 years ago by Gordon Smyth 51k • written 9.0 years ago by komal.rathi ▴ 120

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5.6k

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edger ercc

10.0 years ago John ▴ 10

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3.1k

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seqc rsubread featurecounts subjunc ercc News

10.0 years ago Wei Shi ★ 3.6k

6 results • Page 1 of 1

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Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by daniela.gutierrezandrade • 0

Hello, I am running into a similar issue. After setting the design, at the beginning of the analysis I filter rows with low counts. d…

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k

Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…

Votes

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

biomaRt rnorvegicus_gene_ensembl not available anymore

A: Does edgeR need to specify reference group?

Awards • All

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20