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EpicV2
•
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2
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5
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803
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Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 7 weeks ago by
aldea85
• 0 • written 6 months ago by
Courtney
• 0
1
vote
2
replies
367
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 9 days ago by
Gordon Smyth
50k • written 9 days ago by
Kim
• 0
1
vote
7
replies
1.8k
views
Error using champ.import
ChAMP
EPICv2
updated 25 days ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
0
votes
6
replies
1.6k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 7 months ago by
Zuguang Gu
▴ 260 • written 8 months ago by
Izabela.ams
• 0
0
votes
1
reply
272
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
updated 9 weeks ago by
belinda.phipson
▴ 40 • written 9 weeks ago by
s.malik
• 0
0
votes
2
replies
710
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 3 months ago by
shuo
• 0 • written 4 months ago by
ChunkyJones
• 0
0
votes
4
replies
454
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 11 weeks ago by
James W. MacDonald
65k • written 11 weeks ago by
rae.alshammari
▴ 10
7 results • Page
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Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
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Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: minfi latest update for EPIC V2 chip
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
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