Showing : ExpressionData • reset
3
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2
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1.2k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 3.1 years ago by 50k • written 3.1 years ago by • 0
0
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3
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798
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expression data
ExpressionData ExpressionNormalizationWorkflow
updated 19 months ago by 65k • written 19 months ago by • 0
1
vote
3
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969
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DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 3.3 years ago by 41k • written 3.3 years ago by • 0
0
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1
reply
643
views
HSMMSingleCell metadata
ExperimentHubData ExpressionData CellDataSet RNASeqData
2.1 years ago karl.stamm ▴ 10
0
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1
reply
358
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Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 12 months ago by 41k • written 12 months ago by • 0
0
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2
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1.8k
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R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 15 months ago by 50k • written 15 months ago by • 0
0
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2
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1.7k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara • 0
2
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2
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822
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Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 2.1 years ago by • 0 • written 2.2 years ago by ▴ 10
3
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2
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540
views
please resolve the issue
gene ExpressionData
updated 13 months ago by 65k • written 13 months ago by • 0
0
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0
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1.1k
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How to display or output expression data with non-unique feature labels?
ExpressionData ExpressionData
16.9 years ago Kocherginsky, Masha [BSD] - HSD ▴ 10
0
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3
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893
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Error in loading data set
ExpressionData
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
0
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2
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580
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Doubt about expression data as well as assay
GEOquery ExpressionData assay SummarizedExperiment ExpressionAtlas
updated 13 months ago by • 0 • written 13 months ago by • 0
1
vote
0
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825
views
nested design with random factor and limma???
ExpressionData limma ExpressionData limma
15.8 years ago Bettina Kulle Andreassen ▴ 20
0
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0
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820
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nested design with random factor and limma???
ExpressionData limma ExpressionData limma
15.8 years ago Gordon Smyth 50k
0
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1
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709
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Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 3.4 years ago by 41k • written 3.4 years ago by ▴ 40
0
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0
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1.2k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
3.3 years ago jol.espinoz ▴ 40
0
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0
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541
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edgeR testing interactions between two factors while controlling for blocking factor
edgeR ExpressionData RNASeqData
2.1 years ago Mafalda • 0
0
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0
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1.3k
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How to display or output expression data with non-unique feature labels?
Annotation ExpressionData Annotation ExpressionData
16.9 years ago Martin Morgan 25k
0
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0
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531
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Gene expression changes in one condition
RNASeq Gene ExpressionData
2.5 years ago AZ ▴ 30
19 results • Page 1 of 1
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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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