Showing : ExpressionData • reset
1
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3
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972
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DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 3.3 years ago by 42k • written 3.3 years ago by • 0
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3
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800
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expression data
ExpressionData ExpressionNormalizationWorkflow
updated 19 months ago by 65k • written 19 months ago by • 0
0
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3
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897
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Error in loading data set
ExpressionData
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
0
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2
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1.8k
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R: Confused about Limma R package output being LogFC or Log2FC
limma R ExpressionData
updated 15 months ago by 50k • written 15 months ago by • 0
0
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2
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583
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Doubt about expression data as well as assay
GEOquery ExpressionData assay SummarizedExperiment ExpressionAtlas
updated 13 months ago by • 0 • written 13 months ago by • 0
3
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2
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1.2k
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NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 3.1 years ago by 50k • written 3.1 years ago by • 0
0
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2
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1.7k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara • 0
2
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2
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825
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Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 2.1 years ago by • 0 • written 2.2 years ago by ▴ 10
3
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2
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544
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please resolve the issue
gene ExpressionData
updated 14 months ago by 65k • written 14 months ago by • 0
0
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1
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361
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Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 12 months ago by 42k • written 12 months ago by • 0
0
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1
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712
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Function createExpressionSet: Creating an ExpressionSet - Which package needed?
ExpressionData
updated 3.4 years ago by 42k • written 3.4 years ago by ▴ 40
0
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1
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643
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HSMMSingleCell metadata
ExperimentHubData ExpressionData CellDataSet RNASeqData
2.1 years ago karl.stamm ▴ 10
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0
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543
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edgeR testing interactions between two factors while controlling for blocking factor
edgeR ExpressionData RNASeqData
2.1 years ago Mafalda • 0
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0
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1.3k
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How to display or output expression data with non-unique feature labels?
Annotation ExpressionData Annotation ExpressionData
16.9 years ago Martin Morgan 25k
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0
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1.1k
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How to display or output expression data with non-unique feature labels?
ExpressionData ExpressionData
16.9 years ago Kocherginsky, Masha [BSD] - HSD ▴ 10
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0
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1.2k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
3.3 years ago jol.espinoz ▴ 40
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0
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821
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nested design with random factor and limma???
ExpressionData limma ExpressionData limma
15.8 years ago Gordon Smyth 50k
1
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0
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826
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nested design with random factor and limma???
ExpressionData limma ExpressionData limma
15.8 years ago Bettina Kulle Andreassen ▴ 20
0
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0
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533
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Gene expression changes in one condition
RNASeq Gene ExpressionData
2.5 years ago AZ ▴ 30
19 results • Page 1 of 1
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Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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