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886

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factor DESeq2 MultipleComparison

updated 3.1 years ago by swbarnes2 ★ 1.4k • written 3.1 years ago by diegocastano182 • 0

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998

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Factor Levels Dispersionestimates DESeq2

3.2 years ago rafaelsolersanblas ▴ 50

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1.8k

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deseq2 levels factor colData

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by ariel ▴ 20

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1.9k

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genomicranges RaggedExperiment coercion logical factor

updated 7.1 years ago by Marcel Ramos 700 • written 7.1 years ago by Taran • 0

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3.9k

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deseq2 deseq factor rnaseq

updated 7.4 years ago by Peter Langfelder ★ 3.0k • written 7.4 years ago by sup230 ▴ 30

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2.1k

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genomicranges seqnames factor

8.2 years ago wcstcyx ▴ 30

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956

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R overrrepresentation factor variable factor enrichment

8.2 years ago IOM ▴ 20

7 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

Awards • All

Teacher to dsull ▴ 40