Bioconductor FeatureCounts

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6.1k

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rsubread featurecounts

updated 3 months ago by Gordon Smyth 50k • written 9.2 years ago by Ryan C. Thompson ★ 7.9k

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18k

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featurecounts rsubread

updated 10 months ago by Robert • 0 • written 9.0 years ago by samuel collombet ▴ 140

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749

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featurecounts Rsubread

3 months ago isaac.vock • 0

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4.7k

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subread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 2.8 years ago by s.muroy ▴ 10

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2.3k

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featurecounts SAM htseqcounts

updated 10 months ago by Yang Liao ▴ 380 • written 7.0 years ago by courtney.stairs • 0

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440

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featureCounts Rsubread

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by tjgray4 • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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1.0k

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RNASeqData Rsubread mapping featurecounts

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by vitoriastavis • 0

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1.6k

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rsubread featurecounts summarizeoverlaps

updated 4 weeks ago by isaac.vock • 0 • written 7.9 years ago by Jon Manning ▴ 90

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254

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featureCounts Rsubread

4 weeks ago • updated 14 days ago isaac.vock • 0

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264

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featureCounts Rsubread

updated 8 weeks ago by Wei Shi ★ 3.6k • written 12 weeks ago by Alex • 0

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865

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Bioconductor Rsubread featureCounts

updated 12 months ago by Wei Shi ★ 3.6k • written 12 months ago by Carlos • 0

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662

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Rsubread featureCounts

updated 9 months ago by Yang Liao ▴ 380 • written 9 months ago by StevenE.Strong • 0

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945

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rpkm edgeR featureCounts

8 months ago Gordon Smyth 50k

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143

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FeatureCounts Rsubread

8 weeks ago chris2.a.white • 0

15 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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