Showing : FeatureCounts • reset
7
votes
28
replies
6.2k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread featurecounts
updated 3 months ago by 50k • written 9.2 years ago by ★ 7.9k
4
votes
6
replies
765
views
[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
featurecounts Rsubread
3 months ago isaac.vock • 0
2
votes
2
replies
1.6k
views
Running featureCounts() in 'IntersectionStrict' mode
rsubread featurecounts summarizeoverlaps
updated 6 weeks ago by • 0 • written 7.9 years ago by ▴ 90
0
votes
2
replies
3.5k
views
Dealing with multi-overlapping and multi-mapping reads
RNA-seq featureCounts ht-seq
written 3.8 years ago by ▴ 80
0
votes
4
replies
460
views
Adjusting featureCounts settings in Galaxy for miRNA overlaps
featureCounts Rsubread
updated 3 months ago by 50k • written 3 months ago by • 0
3
votes
16
replies
18k
views
featureCounts - paired-end data
featurecounts rsubread
updated 10 months ago by • 0 • written 9.0 years ago by ▴ 140
1
vote
5
replies
4.7k
views
featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
subread featureCounts
updated 9 months ago by ▴ 380 • written 2.9 years ago by ▴ 10
1
vote
1
reply
676
views
featureCounts bug with unpaired reads
Rsubread featureCounts
updated 9 months ago by ▴ 380 • written 9 months ago by • 0
1
vote
1
reply
277
views
featureCounts unable to assign long reads to one specific isoform
featureCounts Rsubread
updated 9 weeks ago by ★ 3.6k • written 3 months ago by • 0
0
votes
0
replies
969
views
Tutorial: Read data file containing both counts and annotation into edgeR
rpkm edgeR featureCounts
8 months ago Gordon Smyth 50k
0
votes
5
replies
2.3k
views
FeatureCounts output to SAM like htseq-counts?
featurecounts SAM htseqcounts
updated 10 months ago by ▴ 380 • written 7.0 years ago by • 0
0
votes
0
replies
152
views
Feature Counts -R XS Read Assignment Tag
FeatureCounts Rsubread
9 weeks ago chris2.a.white • 0
0
votes
2
replies
1.0k
views
understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData Rsubread mapping featurecounts
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
2
replies
267
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts Rsubread
6 weeks ago • updated 23 days ago isaac.vock • 0
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I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
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thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
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Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
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did you find a solution? I´m having the same problem
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