Showing : GAGE package • reset
0
votes
0
replies
508
views
GAGE for non model organism
gage package gage
3.9 years ago melkile26 • 0
1
vote
2
replies
600
views
GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
4.0 years ago atakanekiz ▴ 30
5
votes
7
replies
2.1k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 4.1 years ago by 60k • written 4.1 years ago by ▴ 20
0
votes
2
replies
2.2k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 3 months ago by • 0 • written 4.4 years ago by • 0
2
votes
4
replies
779
views
Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 4.9 years ago by 45k • written 4.9 years ago by ▴ 30
1
vote
0
replies
1.0k
views
DESeq2 - GAGE workflow
gage package deseq2
4.9 years ago sup230 ▴ 30
0
votes
2
replies
939
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 5.7 years ago by ★ 1.5k • written 5.7 years ago by • 0
1
vote
2
replies
906
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
5.9 years ago joanito.liberti • 0
0
votes
1
reply
599
views
Question on Gage
gage package path.ids RNA-Seq
5.9 years ago rl1385 • 0
0
votes
0
replies
627
views
GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
6.0 years ago smt8n • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: Error by ATpoint ★ 1.3k
https://github.com/conda-forge/rpy2-feedstock/issues/1
Comment: Error: BiocParallel errors by lxl13260684135 • 0
I came across the same problem, have you solved it?
Answer: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k
Standard rules apply for filtering in R. If the genes are the rownames of the results object `res` then: res[my_ges,] or if the colu…
Answer: ComplexHeatmap: Change font size of annotation axis values by nalaspina • 0
Someone on the original post was kind enough to provide the answer (in bold below): row_ha = rowAnnotation(foo2 = runif(10), bar2 = anno…
Answer: setting sizeFactors from scran :: caculateSumFactors. by ATpoint ★ 1.3k
You can conveniently convert your SingleCellExperiment to a DESeqDataSet, see https://bioconductor.org/packages/devel/bioc/vignettes/scran/…
Votes
How to get DESeq2 results for a list of genes
Answer: setting sizeFactors from scran :: caculateSumFactors.
Answer: ComplexHeatmap: Change font size of annotation axis values
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
A: svaseq: how many and which surrogate variables to pick
Awards • All
Scholar to jaro.slamecka ▴ 130
Scholar to James W. MacDonald 60k
Teacher to Gordon Smyth 45k
Popular Question to Kelen • 0
Popular Question to woongjaej • 0
Locations • All
Germany, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
The city by the bay, 1 hour ago
EMBL Heidelberg / de.NBI, 2 hours ago
Australia, 3 hours ago
Traffic: 191 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6