Bioconductor GO

Showing : GO • reset

votes

replies

3.7k

views

clusterProfiler GO GO enrichment genesetenrichment

updated 6 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

votes

replies

5.0k

views

clusterProfiler AnnotationHub GO uniprot

updated 3 months ago by Guido Hooiveld ★ 3.9k • written 3.3 years ago by Alberto • 0

votes

258

views

DNAMethylation GO MethylationArray missMethyl EPICv2

updated 8 weeks ago by belinda.phipson ▴ 40 • written 8 weeks ago by s.malik • 0

votes

621

views

GO biomaRt

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by cstorer • 0

votes

replies

409

views

GO EnrichmentBrowser

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by prity6459 • 0

vote

424

views

go DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Alvin • 0

vote

replies

354

views

GO limma CAMERA

updated 12 weeks ago by Gordon Smyth 50k • written 12 weeks ago by Tyler Sagendorf ▴ 10

votes

replies

562

views

GO ensembldb

6 months ago Rockbar • 0

8 results • Page 1 of 1

Recent ...

Replies

Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

Awards • All

Scholar to ATpoint ★ 4.1k