Bioconductor GO

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3.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 5 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 11 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

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336

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GO limma CAMERA

updated 10 weeks ago by Gordon Smyth 50k • written 11 weeks ago by Tyler Sagendorf ▴ 10

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416

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go DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Alvin • 0

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547

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GO ensembldb

6 months ago Rockbar • 0

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378

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GO EnrichmentBrowser

updated 12 weeks ago by James W. MacDonald 65k • written 3 months ago by prity6459 • 0

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241

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 7 weeks ago by belinda.phipson ▴ 40 • written 7 weeks ago by s.malik • 0

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611

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GO biomaRt

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by cstorer • 0

8 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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