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GOSim
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0
votes
2
replies
2.0k
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GOSim yeast
GO
Yeast
GOSim
GO
Yeast
GOSim
updated 7.2 years ago by
solis
• 0 • written 12.0 years ago by
Guest User
★ 13k
0
votes
3
replies
1.2k
views
Query Gene Ontology
GOSim
GOSim
updated 13.0 years ago by
Wolfgang Huber
★ 13k • written 13.0 years ago by
LEMAITRE Hervé Université Paris Sud
▴ 10
0
votes
2
replies
1.3k
views
Simple GO pie and GOSim install error
GO
Organism
biomaRt
GOSim
GO
Organism
biomaRt
GOSim
updated 12.7 years ago by
Olivier Lucas
▴ 40 • written 12.7 years ago by
Marc Carlson
★ 7.2k
0
votes
1
reply
1.4k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim
gosemsim
updated 7.2 years ago by
Lluís Revilla Sancho
▴ 730 • written 8.6 years ago by
s.apocarpum
▴ 10
3
votes
3
replies
841
views
compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 5.6 years ago by
Lluís Revilla Sancho
▴ 730 • written 5.6 years ago by
monifass
▴ 10
0
votes
1
reply
1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
updated 14.7 years ago by
Marc Carlson
★ 7.2k • written 14.7 years ago by
Gang Chen
▴ 20
1
vote
1
reply
675
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim
GOSemSim
updated 15 months ago by
Lluís Revilla Sancho
▴ 730 • written 15 months ago by
eliska.ochodkova
▴ 10
0
votes
0
replies
1.2k
views
Simple GO pie and GOSim install error
GO
Organism
biomaRt
GOSim
GO
Organism
biomaRt
GOSim
12.8 years ago
Olivier Lucas
▴ 40
0
votes
0
replies
845
views
Problem while working with GOSim package
GOSim
GOSim
11.7 years ago
ANIRBAN BHAR
▴ 60
0
votes
0
replies
1.0k
views
GOSim Problem
Yeast
Organism
GOSim
Yeast
Organism
GOSim
11.7 years ago
Pablo Andretta Jaskowiak
▴ 10
0
votes
1
reply
706
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 20 months ago by
Basti
▴ 780 • written 20 months ago by
yeluo
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage
by
ATpoint
★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Answer: ChAMP not available for bioconductor 3.19
by
shepherl
3.9k
See https://support.bioconductor.org/p/9158324/#9158336 . We have reached out to goseq to fix the package; we have a community member …
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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▴ 350
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Wei Shi
★ 3.6k
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