Showing : GOSim • reset
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GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 10
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1
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707
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I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 20 months ago by ▴ 780 • written 20 months ago by • 0
3
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3
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841
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compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 5.6 years ago by ▴ 730 • written 5.6 years ago by ▴ 10
0
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1
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1.4k
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Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 7.2 years ago by ▴ 730 • written 8.6 years ago by ▴ 10
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0
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1.0k
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GOSim Problem
Yeast Organism GOSim Yeast Organism GOSim
11.7 years ago Pablo Andretta Jaskowiak ▴ 10
0
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0
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845
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Problem while working with GOSim package
GOSim GOSim
11.7 years ago ANIRBAN BHAR ▴ 60
0
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2
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2.0k
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GOSim yeast
GO Yeast GOSim GO Yeast GOSim
updated 7.2 years ago by • 0 • written 12.0 years ago by ★ 13k
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2
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1.3k
views
Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 12.7 years ago by ▴ 40 • written 12.7 years ago by ★ 7.2k
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0
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1.2k
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Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
12.8 years ago Olivier Lucas ▴ 40
0
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3
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1.2k
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Query Gene Ontology
GOSim GOSim
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 10
0
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1
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1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 20
11 results • Page 1 of 1
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Answer: Counter-directional LFC shrinkage by swbarnes2 ★ 1.4k
The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …
Comment: Cannot install oligo on Fedora by Guido Hooiveld ★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora by James W. MacDonald 66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function by Guido Hooiveld ★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage by ATpoint ★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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