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GOSim
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2
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2.0k
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GOSim yeast
GO
Yeast
GOSim
GO
Yeast
GOSim
updated 7.2 years ago by
solis
• 0 • written 12.0 years ago by
Guest User
★ 13k
0
votes
1
reply
1.4k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim
gosemsim
updated 7.1 years ago by
Lluís Revilla Sancho
▴ 730 • written 8.6 years ago by
s.apocarpum
▴ 10
0
votes
2
replies
1.3k
views
Simple GO pie and GOSim install error
GO
Organism
biomaRt
GOSim
GO
Organism
biomaRt
GOSim
updated 12.7 years ago by
Olivier Lucas
▴ 40 • written 12.7 years ago by
Marc Carlson
★ 7.2k
0
votes
3
replies
1.2k
views
Query Gene Ontology
GOSim
GOSim
updated 13.0 years ago by
Wolfgang Huber
★ 13k • written 13.0 years ago by
LEMAITRE Hervé Université Paris Sud
▴ 10
0
votes
1
reply
1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
updated 14.7 years ago by
Marc Carlson
★ 7.2k • written 14.7 years ago by
Gang Chen
▴ 20
0
votes
0
replies
1.2k
views
Simple GO pie and GOSim install error
GO
Organism
biomaRt
GOSim
GO
Organism
biomaRt
GOSim
12.7 years ago
Olivier Lucas
▴ 40
0
votes
0
replies
993
views
GOSim Problem
Yeast
Organism
GOSim
Yeast
Organism
GOSim
11.6 years ago
Pablo Andretta Jaskowiak
▴ 10
0
votes
0
replies
834
views
Problem while working with GOSim package
GOSim
GOSim
11.7 years ago
ANIRBAN BHAR
▴ 60
3
votes
3
replies
830
views
compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 5.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 5.5 years ago by
monifass
▴ 10
0
votes
1
reply
690
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 19 months ago by
Basti
▴ 780 • written 19 months ago by
yeluo
• 0
1
vote
1
reply
650
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim
GOSemSim
updated 15 months ago by
Lluís Revilla Sancho
▴ 730 • written 15 months ago by
eliska.ochodkova
▴ 10
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Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
nbay13
• 0
yes my mistake I mixed the equation up while copying into the reply box. Should have been: ```{r} 2 * (1 - pt(abs(tstat), df = df.residual…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
Gordon Smyth
50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
nbay13
• 0
EDIT: removed
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Votes
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
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