Bioconductor GOTHiC

Showing : GOTHiC • reset

votes

replies

views

GOTHiC BubbleTree PANR

8 months ago Abu 0

votes

replies

2.3k

views

diffhic gothic hicup hic-c hic

updated 6.9 years ago by Aaron Lun ★ 29k • written 6.9 years ago by mictadlo ▴ 10

votes

1.3k

views

hic diffhic gothic hicup hic-c

6.9 years ago mictadlo ▴ 10

votes

replies

1.4k

views

GOTHiC

7.0 years ago alongalor ▴ 10

votes

replies

1.0k

views

gothic

9.4 years ago manduchi ▴ 10

votes

replies

2.0k

views

GOTHiC hic

10.1 years ago Nathan Sheffield ▴ 10

votes

replies

3.5k

views

HiTC gothic diffhic HiC

10.2 years ago • updated 10.1 years ago Bogdan ▴ 670

votes

4.1k

views

bioconductor gothic R

updated 10.4 years ago by Vicky_Tche • 0 • written 10.4 years ago by sv380 • 0

votes

replies

1.4k

views

GOTHiC software error

10.5 years ago bef22 • 0

9 results • Page 1 of 1

Recent ...

Replies

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

Votes

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

Awards • All

Popular Question to Ou, Jianhong ★ 1.3k