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GOTHiC
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GOTHiC
BubbleTree
PANR
8 months ago
Abu
0
0
votes
9
replies
2.3k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 6.9 years ago by
Aaron Lun
★ 29k • written 6.9 years ago by
mictadlo
▴ 10
0
votes
1
reply
1.3k
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
6.9 years ago
mictadlo
▴ 10
0
votes
3
replies
1.4k
views
GOTHiC's GOTHiC's function fails with bwa input
GOTHiC
7.0 years ago
alongalor
▴ 10
0
votes
0
replies
1.0k
views
GOTHiC odd output
gothic
9.4 years ago
manduchi
▴ 10
0
votes
3
replies
2.0k
views
GOTHiC hg19 error
GOTHiC
hic
10.1 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
3.5k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
10.2 years ago • updated 10.1 years ago
Bogdan
▴ 670
0
votes
1
reply
4.1k
views
Error in FUN(X[[i]], ...) : subscript out of bounds
bioconductor
gothic
R
updated 10.4 years ago by
Vicky_Tche
• 0 • written 10.4 years ago by
sv380
• 0
0
votes
0
replies
1.4k
views
GOTHiC seqlevel bug
GOTHiC
software error
10.5 years ago
bef22
• 0
9 results • Page
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Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Comment: DESeq2 interactions
by
Michael Love
43k
GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …
Answer: Important: Bioconductor Release 3.22 Delayed
by
shepherl
4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
Votes
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
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