Bioconductor GOTHiC

Showing : GOTHiC • reset

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1.8k

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diffhic gothic hicup hic-c hic

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by mictadlo ▴ 10

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hic diffhic gothic hicup hic-c

6.1 years ago • updated 6.0 years ago mictadlo ▴ 10

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GOTHiC

6.2 years ago alongalor ▴ 10

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921

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gothic

8.5 years ago manduchi ▴ 10

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GOTHiC hic

9.3 years ago Nathan Sheffield ▴ 10

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HiTC gothic diffhic HiC

9.3 years ago Bogdan ▴ 670

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bioconductor gothic R

updated 9.5 years ago by Vicky_Tche • 0 • written 9.6 years ago by sv380 • 0

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GOTHiC software error

9.7 years ago bef22 • 0

8 results • Page 1 of 1

Recent ...

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

Awards • All

Teacher to dsull ▴ 40