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GOslim
•
reset
0
votes
8
replies
1.3k
views
GOslim missing GO term
GO.db
GOslim
14 months ago
amanda
• 0
3
votes
4
replies
2.4k
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase
go
gene ontology
goslim
5.0 years ago • updated 23 months ago
samwhite
▴ 20
7
votes
9
replies
4.3k
views
GSEABase - View/extract GO terms mapped to each GOslim
go
GSEABase
GOslim
gene ontology
5.0 years ago • updated 22 months ago
samwhite
▴ 20
0
votes
2
replies
1.9k
views
Resolved- GSEAbase: goSlim function, pb with counts
GSEA
GO
goSlim
7.4 years ago
maeva.mollion
• 0
1
vote
1
reply
1.5k
views
Obtaining Go slim terms from biomaRt
biomaRt
goslim
go
updated 8.3 years ago by
Mike Smith
★ 6.6k • written 8.3 years ago by
rubi
▴ 110
0
votes
0
replies
1.5k
views
Create list of genes within each GOslim term
gene ontology
goslim
enrichment analysis
gene annotation
8.8 years ago
mirko
• 0
6 results • Page
1 of 1
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Replies
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `ntd()` or `vst/…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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