Bioconductor GOslim

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GO.db GOslim

17 months ago amanda • 0

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2.6k

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gseabase go gene ontology goslim

5.3 years ago • updated 2.2 years ago samwhite ▴ 20

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4.7k

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go GSEABase GOslim gene ontology

5.3 years ago • updated 2.1 years ago samwhite ▴ 20

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GSEA GO goSlim

7.7 years ago maeva.mollion • 0

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biomaRt goslim go

updated 8.5 years ago by Mike Smith ★ 6.6k • written 8.5 years ago by rubi ▴ 110

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gene ontology goslim enrichment analysis gene annotation

9.1 years ago mirko • 0

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Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10

Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…

Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by James W. MacDonald 68k

The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by nytwordlehints • 0

I have always had a great fondness for games, so witnessing their transformation into animated versions is truly a delightful experience. […

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Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

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