Bioconductor GSE

Showing : GSE • reset

votes

replies

2.1k

views

geoquery GSE

6.7 years ago mahm ▴ 20

votes

replies

3.1k

views

gene expression geoquery GSE bioconductor microarray

updated 6.7 years ago by Sean Davis 21k • written 6.7 years ago by mahm ▴ 20

votes

1.6k

views

lumi microarray GSE

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by mkd12 • 0

votes

replies

1.7k

views

microarray GSE

7.4 years ago Salvo88 ▴ 20

vote

replies

1.7k

views

GSE subsetting microarray

updated 7.5 years ago by Axel Klenk ★ 1.1k • written 7.5 years ago by A ▴ 60

votes

1.9k

views

geoquery error message GEOquery GSE GEO

7.7 years ago Barah ▴ 20

votes

replies

2.0k

views

GSE soft files GEO data

9.5 years ago sz • 0

vote

1.4k

views

geoquery GSE identical row.names

updated 10.5 years ago by Sean Davis 21k • written 10.5 years ago by PyPer ▴ 20

8 results • Page 1 of 1

Recent ...

Replies

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Awards • All

Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k