Bioconductor GSE

Showing : GSE • reset

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2.0k

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geoquery GSE

6.4 years ago mahm ▴ 20

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2.9k

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gene expression geoquery GSE bioconductor microarray

updated 6.4 years ago by Sean Davis 21k • written 6.4 years ago by mahm ▴ 20

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1.5k

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lumi microarray GSE

updated 6.9 years ago by Gordon Smyth 52k • written 6.9 years ago by mkd12 • 0

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1.5k

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microarray GSE

7.2 years ago Salvo88 ▴ 20

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1.6k

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GSE subsetting microarray

updated 7.2 years ago by Axel Klenk ★ 1.0k • written 7.2 years ago by A ▴ 40

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1.7k

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geoquery error message GEOquery GSE GEO

7.4 years ago Barah ▴ 20

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1.9k

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GSE soft files GEO data

9.3 years ago sz • 0

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1.4k

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geoquery GSE identical row.names

updated 10.3 years ago by Sean Davis 21k • written 10.3 years ago by PyPer ▴ 20

8 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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