Showing : GSE • reset
2
votes
3
replies
2.3k
views
Filtering the probe set ids from GSE file
geoquery GSE
7.2 years ago mahm ▴ 20
3
votes
11
replies
3.6k
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression geoquery GSE bioconductor microarray
updated 7.2 years ago by 21k • written 7.2 years ago by ▴ 20
0
votes
1
reply
1.8k
views
Analysing microarray raw data: GSEXXXX_non-normalized.txt
lumi microarray GSE
updated 7.8 years ago by 53k • written 7.8 years ago by • 0
2
votes
2
replies
1.8k
views
how to obtain differentially expressed genes from a GSE serie
microarray GSE
8.0 years ago Salvo88 ▴ 20
1
vote
2
replies
1.9k
views
Subsetting GSE data with information from two different slots
GSE subsetting microarray
updated 8.0 years ago by ★ 1.1k • written 8.0 years ago by ▴ 60
0
votes
1
reply
2.0k
views
GEOquery download error
geoquery error message GEOquery GSE GEO
8.2 years ago Barah ▴ 20
0
votes
3
replies
2.2k
views
GEOquery problems while trying to process GSE soft files
GSE soft files GEO data
10.1 years ago sz • 0
1
vote
1
reply
1.6k
views
Compare Row.names and ID from GSE datasets
geoquery GSE identical row.names
updated 11.1 years ago by 21k • written 11.1 years ago by ▴ 20
8 results • Page 1 of 1
Recent ...
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Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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