Bioconductor GSE

Showing : GSE • reset

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1.9k

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geoquery GSE

6.2 years ago mahm ▴ 20

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2.8k

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gene expression geoquery GSE bioconductor microarray

updated 6.2 years ago by Sean Davis 21k • written 6.2 years ago by mahm ▴ 20

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1.5k

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lumi microarray GSE

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by mkd12 • 0

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microarray GSE

7.0 years ago Salvo88 ▴ 20

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GSE subsetting microarray

updated 7.0 years ago by Axel Klenk ★ 1.0k • written 7.0 years ago by A ▴ 40

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1.6k

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geoquery error message GEOquery GSE GEO

7.2 years ago Barah ▴ 20

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1.8k

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GSE soft files GEO data

9.1 years ago sz • 0

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1.3k

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geoquery GSE identical row.names

updated 10.1 years ago by Sean Davis 21k • written 10.1 years ago by PyPer ▴ 20

8 results • Page 1 of 1

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Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

You are an absolute lifesaver, thank you so much for the clarification!

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…

Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

Comment: ANOVA like approach of edgeR by SamGG ▴ 350

Simply remove the cell type from the model. design <- model.matrix(~targets$Status)

Votes

Answer: ANOVA like approach of edgeR

A: ANOVA-like test with edgeR

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

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