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GSE
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reset
2
votes
3
replies
1.9k
views
Filtering the probe set ids from GSE file
geoquery
GSE
6.2 years ago
mahm
▴ 20
3
votes
11
replies
2.8k
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression
geoquery
GSE
bioconductor
microarray
updated 6.2 years ago by
Sean Davis
21k • written 6.2 years ago by
mahm
▴ 20
0
votes
1
reply
1.5k
views
Analysing microarray raw data: GSEXXXX_non-normalized.txt
lumi
microarray
GSE
updated 6.8 years ago by
Gordon Smyth
51k • written 6.8 years ago by
mkd12
• 0
2
votes
2
replies
1.5k
views
how to obtain differentially expressed genes from a GSE serie
microarray
GSE
7.0 years ago
Salvo88
▴ 20
1
vote
2
replies
1.5k
views
Subsetting GSE data with information from two different slots
GSE
subsetting
microarray
updated 7.0 years ago by
Axel Klenk
★ 1.0k • written 7.0 years ago by
A
▴ 40
0
votes
1
reply
1.6k
views
GEOquery download error
geoquery error message
GEOquery
GSE
GEO
7.2 years ago
Barah
▴ 20
0
votes
3
replies
1.8k
views
GEOquery problems while trying to process GSE soft files
GSE
soft files
GEO data
9.1 years ago
sz
• 0
1
vote
1
reply
1.3k
views
Compare Row.names and ID from GSE datasets
geoquery
GSE
identical
row.names
updated 10.1 years ago by
Sean Davis
21k • written 10.1 years ago by
PyPer
▴ 20
8 results • Page
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model
by
abadgerw
• 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction
by
abadgerw
• 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
by
Michael Love
42k
That is the rows that did converge.
Answer: Is my time course analysis with DESeq2 valid?
by
Michael Love
42k
For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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