Bioconductor GSE

Showing : GSE • reset

votes

replies

2.2k

views

geoquery GSE

7.1 years ago mahm ▴ 20

votes

replies

3.5k

views

gene expression geoquery GSE bioconductor microarray

updated 7.1 years ago by Sean Davis 21k • written 7.1 years ago by mahm ▴ 20

votes

1.7k

views

lumi microarray GSE

updated 7.7 years ago by Gordon Smyth 53k • written 7.7 years ago by mkd12 • 0

votes

replies

1.8k

views

microarray GSE

7.9 years ago Salvo88 ▴ 20

vote

replies

1.9k

views

GSE subsetting microarray

updated 8.0 years ago by Axel Klenk ★ 1.1k • written 8.0 years ago by A ▴ 60

votes

2.0k

views

geoquery error message GEOquery GSE GEO

8.1 years ago Barah ▴ 20

votes

replies

2.1k

views

GSE soft files GEO data

10.0 years ago sz • 0

vote

1.6k

views

geoquery GSE identical row.names

updated 11.0 years ago by Sean Davis 21k • written 11.0 years ago by PyPer ▴ 20

8 results • Page 1 of 1

Recent ...

Replies

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

Awards • All