Bioconductor GSEA

Showing : GSEA • reset

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328

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fgsea gsea

4 weeks ago • updated 23 days ago Gordon • 0

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192

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clusterProfiler annotation gseGO gsea OrgDb

updated 4 weeks ago by Guido Hooiveld ★ 3.9k • written 4 weeks ago by enee ▴ 10

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210

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msigdb gmt GSEA

written 5 weeks ago by Georg • 0

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569

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gsea DESeq2

updated 6 months ago by ATpoint ★ 4.0k • written 6 months ago by Grace.Ciabattoni • 0

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1.3k

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enrichplot GSEA clusterProfiler

updated 6 months ago by Fatemeh • 0 • written 8 months ago by Cen • 0

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598

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GSEA fgsea

9 months ago Cen • 0

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962

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GSEA voom limma

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by manuelsokolov • 0

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6.4k

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GSEA GeneSetEnrichment DifferentialExpression

updated 11 weeks ago by ATpoint ★ 4.0k • written 2.1 years ago by nhaus ▴ 30

8 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0