Showing : GTEx • reset
1
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Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2 recount GTEx TCGA recount3
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by ▴ 20
2
votes
2
replies
3.5k
views
Create TPM gene tables/dataframe from ReCount3
recount3 TCGA GTEx DESeq2
3.5 years ago David ▴ 20
2
votes
2
replies
1.9k
views
Gene Selection GTex for DESeq2 Analysis
DESeq2 GTEx
4.8 years ago Bine ▴ 50
0
votes
1
reply
4.2k
views
Is GTEx age and sex data available via the recount package?
recount gtex
updated 7.2 years ago by ★ 1.1k • written 7.2 years ago by • 0
2
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2
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1.6k
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Error in ebayes in limma when analyzing GTEx data
limma voom gtex
7.7 years ago mico • 0
1
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2
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2.4k
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DESeq2 for differential gene expression on GTEx dataset
rnaseq deseq2 gtex
updated 8.1 years ago by 43k • written 8.1 years ago by • 0
2
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0
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4.9k
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Tutorial: BoF Bioc2017: Analyzing publicly available cancer genomics data from GTEx and TCGA with Bioconductor
public data TCGA GTEx Tutorial
8.4 years ago shepherl 4.2k
7 results • Page 1 of 1
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Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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