Showing : GTEx • reset
1
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3
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1.9k
views
Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2 recount GTEx TCGA recount3
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by ▴ 20
2
votes
2
replies
3.3k
views
Create TPM gene tables/dataframe from ReCount3
recount3 TCGA GTEx DESeq2
3.4 years ago David ▴ 20
2
votes
2
replies
1.9k
views
Gene Selection GTex for DESeq2 Analysis
DESeq2 GTEx
4.7 years ago Bine ▴ 50
0
votes
1
reply
4.1k
views
Is GTEx age and sex data available via the recount package?
recount gtex
updated 7.0 years ago by ★ 1.1k • written 7.1 years ago by • 0
2
votes
2
replies
1.6k
views
Error in ebayes in limma when analyzing GTEx data
limma voom gtex
7.6 years ago mico • 0
1
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2
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2.4k
views
DESeq2 for differential gene expression on GTEx dataset
rnaseq deseq2 gtex
updated 8.0 years ago by 43k • written 8.0 years ago by • 0
2
votes
0
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4.8k
views
Tutorial: BoF Bioc2017: Analyzing publicly available cancer genomics data from GTEx and TCGA with Bioconductor
public data TCGA GTEx Tutorial
8.3 years ago shepherl 4.2k
7 results • Page 1 of 1
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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