Bioconductor GTEx

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DESeq2 recount GTEx TCGA recount3

updated 18 months ago by ATpoint ★ 4.5k • written 18 months ago by David ▴ 20

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2.4k

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recount3 TCGA GTEx DESeq2

2.4 years ago David ▴ 20

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1.4k

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DESeq2 GTEx

3.7 years ago Bine ▴ 50

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3.6k

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recount gtex

updated 6.0 years ago by Leonardo Collado Torres ★ 1.1k • written 6.0 years ago by abe • 0

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1.3k

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limma voom gtex

6.6 years ago mico • 0

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2.0k

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rnaseq deseq2 gtex

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by vikram • 0

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4.2k

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public data TCGA GTEx Tutorial

7.3 years ago shepherl 4.1k

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

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A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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