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GTEx
•
reset
1
vote
3
replies
1.8k
views
Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2
recount
GTEx
TCGA
recount3
updated 2.4 years ago by
ATpoint
★ 5.0k • written 2.4 years ago by
David
▴ 20
2
votes
2
replies
3.3k
views
Create TPM gene tables/dataframe from ReCount3
recount3
TCGA
GTEx
DESeq2
3.3 years ago
David
▴ 20
2
votes
2
replies
1.8k
views
Gene Selection GTex for DESeq2 Analysis
DESeq2
GTEx
4.6 years ago
Bine
▴ 50
0
votes
1
reply
4.1k
views
Is GTEx age and sex data available via the recount package?
recount
gtex
updated 7.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 7.0 years ago by
abe
• 0
2
votes
2
replies
1.5k
views
Error in ebayes in limma when analyzing GTEx data
limma
voom
gtex
7.5 years ago
mico
• 0
1
vote
2
replies
2.3k
views
DESeq2 for differential gene expression on GTEx dataset
rnaseq
deseq2
gtex
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
vikram
• 0
2
votes
0
replies
4.7k
views
Tutorial:
BoF Bioc2017: Analyzing publicly available cancer genomics data from GTEx and TCGA with Bioconductor
public data
TCGA
GTEx
Tutorial
8.2 years ago
shepherl
4.2k
7 results • Page
1 of 1
Recent ...
Replies
Comment: JunctionSeq producing strangely large effect sizes for certain exon counting bin
by
97shandie
• 0
That's a tricky issue! I've definitely seen similar behavior in differential exon usage analysis. It sounds like the normalization method J…
Comment: Heat Map
by
97shandie
• 0
Hi Dania, it looks like you're on the right track building your heatmap! It's great you've already filtered your data based on adjusted p-v…
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Results with PON give more variants
by
ejafgdf4.ge.r.m
• 0
It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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