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GenVisR
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
19 months ago
Amy_
• 0
3
votes
10
replies
2.8k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 5 months ago by
zlskidmore
▴ 30 • written 21 months ago by
abhisikta
• 0
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 23 months ago by
Hervé Pagès
16k • written 23 months ago by
Michel
• 0
0
votes
0
replies
1.6k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
23 months ago
e
• 0
0
votes
1
reply
1.0k
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 3.5 years ago by
zlskidmore
▴ 30 • written 3.5 years ago by
Jeni
▴ 10
0
votes
1
reply
703
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
4.6 years ago
sheneicechang
• 0
0
votes
0
replies
912
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
4.6 years ago
sheneicechang
• 0
0
votes
1
reply
1.1k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 5.4 years ago by
zlskidmore
▴ 30 • written 5.5 years ago by
ZihaoXing
• 0
0
votes
1
reply
826
views
Issues with lohSpec
genvisr
lohSpec
5.8 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.1k
views
Copy Number plot cnSpec - how to order samples
genvisr
5.9 years ago
cedric.vmdl
• 0
0
votes
4
replies
1.9k
views
GenVisR- cnSpec CNV plot
GenVisR
6.3 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.2k
views
an error in TvTi: package GenVisR
GenVisR
updated 7.2 years ago by
zlskidmore
▴ 30 • written 7.2 years ago by
Bogdan
▴ 670
2
votes
5
replies
2.7k
views
GenVisR Installation error message
genvisR
8.2 years ago
Deep Adhya
▴ 20
13 results • Page
1 of 1
Recent ...
Replies
Comment: Cannot connect to ExperimentHub server
by
Jiayu
• 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
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Gyan Prakash Mishra
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50k
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WouterDeCoster
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Michael Love
42k
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Malcolm Cook
★ 1.6k
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