Showing : GenVisr • reset
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GenVisR - adding on genomic positions to CovGen graph
GenVisR GenCov
2.1 years ago Amy_ • 0
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10
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3.4k
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error in package GenVisR while installing
GenVisR GenVis
updated 12 months ago by ▴ 30 • written 2.3 years ago by • 0
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1.3k
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Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 2.5 years ago by 16k • written 2.5 years ago by • 0
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How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR maftools
2.5 years ago e • 0
0
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1.2k
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Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants waterfall GenVisR
updated 4.0 years ago by ▴ 30 • written 4.0 years ago by ▴ 10
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1
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840
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Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
5.1 years ago sheneicechang • 0
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1.1k
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
5.2 years ago sheneicechang • 0
0
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1
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1.2k
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how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr genvisr waterfall mutation
updated 6.0 years ago by ▴ 30 • written 6.0 years ago by • 0
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989
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Issues with lohSpec
genvisr lohSpec
6.4 years ago dharia.priyadarshani • 0
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2
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1.4k
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Copy Number plot cnSpec - how to order samples
genvisr
6.5 years ago cedric.vmdl • 0
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4
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2.2k
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GenVisR- cnSpec CNV plot
GenVisR
6.8 years ago daijieqiong ▴ 10
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2
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1.4k
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an error in TvTi: package GenVisR
GenVisR
updated 7.8 years ago by ▴ 30 • written 7.8 years ago by ▴ 670
2
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5
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3.0k
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GenVisR Installation error message
genvisR
8.7 years ago Deep Adhya ▴ 20
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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error by James W. MacDonald 67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Comment: Identical samples after deseq2 batch effect removal by maripane • 0
Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…
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A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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