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Genomic
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11
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How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic
AnnotationHub
GenomicRanges
org.Hs.eg.db
3.4 years ago • updated 3.3 years ago
rohitsatyam102
▴ 20
2
votes
3
replies
1.5k
views
Doubt about WL in cn.mops
dnacopy
dnaseq
genomic
cn.mops
cnv
updated 5.8 years ago by
Günter Klambauer
▴ 540 • written 5.8 years ago by
Cased
• 0
1
vote
1
reply
1.2k
views
GenomicRanges equivalent to bedtools cluster
IRanges
GenomicRanges
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
kalamari
• 0
0
votes
2
replies
546
views
EpiDISH- from Genomic Cordinate
genomic
EpiDISH
updated 16 months ago by
shijieczheng
• 0 • written 16 months ago by
bony.dekumar
▴ 10
0
votes
2
replies
951
views
GRanges::distanceToNearest does not return distance to nearest
GenomicRanges
Genomic
2.7 years ago
Daniel Cameron
▴ 40
0
votes
0
replies
870
views
Job:
Data Manager - BC Cancer Research Center, Vancouver BC
computational
genomic
big data
bioinformatics
Job
4.9 years ago
jmaanaki
• 0
6 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset)
by
Caio
• 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
gene_bioconductor
▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
Votes
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
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