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GenomicFiles
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
2.8 years ago
koushik
• 0
2
votes
6
replies
1.3k
views
memory leak when subsampling BAM
GenomicFiles
ShortRead
Rsamtools
3.2 years ago
robmaz77
▴ 20
1
vote
2
replies
752
views
The metadata from rowRanges is missing in the MAP function of GenomicFiles.
GenomicFiles
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
Qiang
▴ 80
3
votes
2
replies
979
views
ranges input for GenomicFiles
genomicfiles
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
Qiang
▴ 80
3
votes
2
replies
1.1k
views
Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles
reduceByRange
updated 6.7 years ago by
Valerie Obenchain
★ 6.8k • written 6.7 years ago by
maltethodberg
▴ 180
3
votes
3
replies
1.1k
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles
BiocParallel
updated 6.9 years ago by
shepherl
3.9k • written 7.0 years ago by
m.van_iterson
▴ 20
4
votes
2
replies
1.3k
views
readGAlignmentPairs not working correctly when reading a bam file by chunks
rsamtools
genomicalignments
genomicfiles
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
jfiksel
▴ 30
1
vote
1
reply
1.4k
views
How to randomly sample bam files obtaining a subset of information (ex: binning locations)
genomicfiles
rsamtools
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
victoriaccorey
▴ 10
2
votes
2
replies
2.5k
views
How to randomly sample BAM files
rsamtools
genomicalignments
genomicfiles
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Welliton de Souza
▴ 70
0
votes
0
replies
985
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO
Biostrings
rtracklayer
GenomicRanges
BiocParallel
GenomicFiles
9.7 years ago
Dan Tenenbaum
★ 8.2k
10 results • Page
1 of 1
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Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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