Bioconductor GenomicFiles

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606

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

2.8 years ago koushik • 0

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1.2k

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GenomicFiles ShortRead Rsamtools

3.2 years ago robmaz77 ▴ 20

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741

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GenomicFiles

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by Qiang ▴ 80

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966

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genomicfiles

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by Qiang ▴ 80

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1.1k

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genomicfiles reduceByRange

updated 6.7 years ago by Valerie Obenchain ★ 6.8k • written 6.7 years ago by maltethodberg ▴ 170

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1.1k

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GenomicFiles BiocParallel

updated 6.8 years ago by shepherl 3.8k • written 6.9 years ago by m.van_iterson ▴ 20

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1.3k

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rsamtools genomicalignments genomicfiles

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by jfiksel ▴ 30

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1.4k

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genomicfiles rsamtools

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by victoriaccorey ▴ 10

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2.5k

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rsamtools genomicalignments genomicfiles

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by Welliton de Souza ▴ 70

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980

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GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles

9.6 years ago Dan Tenenbaum ★ 8.2k

10 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length