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GenomicFiles
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
2.8 years ago
koushik
• 0
2
votes
6
replies
1.2k
views
memory leak when subsampling BAM
GenomicFiles
ShortRead
Rsamtools
3.2 years ago
robmaz77
▴ 20
1
vote
2
replies
741
views
The metadata from rowRanges is missing in the MAP function of GenomicFiles.
GenomicFiles
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
Qiang
▴ 80
3
votes
2
replies
965
views
ranges input for GenomicFiles
genomicfiles
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
Qiang
▴ 80
3
votes
2
replies
1.1k
views
Passing multiple arguments (like mapply) to the MAP-function in GenomicFiles.
genomicfiles
reduceByRange
updated 6.7 years ago by
Valerie Obenchain
★ 6.8k • written 6.7 years ago by
maltethodberg
▴ 170
3
votes
3
replies
1.1k
views
Parallel reading of Vcfs using VcfStack/RangedVcfStack
GenomicFiles
BiocParallel
updated 6.8 years ago by
shepherl
3.8k • written 6.9 years ago by
m.van_iterson
▴ 20
4
votes
2
replies
1.3k
views
readGAlignmentPairs not working correctly when reading a bam file by chunks
rsamtools
genomicalignments
genomicfiles
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
jfiksel
▴ 30
1
vote
1
reply
1.4k
views
How to randomly sample bam files obtaining a subset of information (ex: binning locations)
genomicfiles
rsamtools
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
victoriaccorey
▴ 10
2
votes
2
replies
2.5k
views
How to randomly sample BAM files
rsamtools
genomicalignments
genomicfiles
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
Welliton de Souza
▴ 70
0
votes
0
replies
979
views
[Bioc-devel] AnnotatioDbi Biostrings load order breaks GenomicFiles summary method
GO
Biostrings
rtracklayer
GenomicRanges
BiocParallel
GenomicFiles
9.6 years ago
Dan Tenenbaum
★ 8.2k
10 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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