Showing : Gostats • reset
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KEGGgraph ??
Pathways GO GOstats keggorth KEGGgraph Pathways GO GOstats keggorth KEGGgraph
17.3 years ago Paul Evans ▴ 180
0
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1
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1.0k
views
Gene ontology Id number to amigo link
GO GOstats GO GOstats
updated 17.3 years ago by 21k • written 17.3 years ago by ★ 1.1k
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views
Post hyperGTest : drawing GO graphs
GO Yeast GOstats topGO GO Yeast GOstats topGO
17.3 years ago balag Ganesan ▴ 140
0
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5
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1.9k
views
Encountering error when using GOstats package
GO ath1121501 GOstats GO ath1121501 GOstats
updated 17.3 years ago by 6.7k • written 17.3 years ago by ▴ 60
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Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
Annotation GO Cancer GOstats biomaRt Annotation GO Cancer GOstats biomaRt
17.3 years ago Emmanuel Levy ▴ 270
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1
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1.2k
views
Ensembl IDs 2 GO term enrichment --> simple solution withoutbiomart? ( I can't install it because of RCurl)
GO GOstats biomaRt GO GOstats biomaRt
17.3 years ago michael watson IAH-C ★ 3.4k
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8
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2.7k
views
Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
GO GOstats biomaRt GO GOstats biomaRt
updated 17.3 years ago by ★ 5.5k • written 17.3 years ago by ▴ 270
0
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4
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1.8k
views
Gostats with Yeast annotation
Annotation GO Yeast GOstats Annotation GO Yeast GOstats
updated 17.5 years ago by ★ 7.2k • written 17.5 years ago by ▴ 650
0
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1
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811
views
error when using GOstats with AnnBuilder built package
Annotation GO GOstats oligo Annotation GO GOstats oligo
updated 17.5 years ago by ★ 7.2k • written 17.5 years ago by ▴ 270
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2
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1.6k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 30
0
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4
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1.5k
views
lumiHumanAll.db, GOstats
Clustering GOstats Clustering GOstats
updated 17.6 years ago by ★ 3.6k • written 17.6 years ago by ▴ 270
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5
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1.8k
views
GOstats with yeast2
yeast2 GOstats yeast2 GOstats
updated 17.6 years ago by ★ 5.5k • written 17.6 years ago by ▴ 370
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2
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1.3k
views
lumi, lumiHumanV2 and GOstats
GO lumiHumanV2 GOstats lumi GO lumiHumanV2 GOstats lumi
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 270
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1
reply
2.5k
views
problem installing package GOstats
GOstats GOstats
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 340
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5
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3.5k
views
Help using ENSMUSG ids in GOstats
Microarray Pathways GOstats Microarray Pathways GOstats
updated 17.7 years ago by ★ 5.5k • written 17.7 years ago by ▴ 30
0
votes
1
reply
1.5k
views
hyperGTest Error in sqliteExecStatement...
GO hgu95av2 GOstats GO hgu95av2 GOstats
updated 17.7 years ago by ★ 5.5k • written 17.7 years ago by ▴ 10
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0
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983
views
GOstats gene set size selection
Microarray GO GOstats Category Microarray GO GOstats Category
17.7 years ago alex lam RI ▴ 30
0
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1
reply
1.3k
views
obtaining genes responsible for over-representation of GO term - GOstats
GOstats GOstats
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 600
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2
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1.2k
views
GOstats gene set size selection
GO GOstats GO GOstats
updated 17.8 years ago by ★ 5.5k • written 17.8 years ago by ▴ 30
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0
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1.1k
views
topGO and GOstats conflict
GO GOstats topGO GO GOstats topGO
17.8 years ago Adrian Alexa ▴ 400
0
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3
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1.8k
views
topGO and GOstats conflict
GO GOstats topGO GO GOstats topGO
17.8 years ago Dick Beyer ★ 1.4k
0
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1
reply
1.0k
views
Understanding GOstats
Annotation GO affy GOstats Annotation GO affy GOstats
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 310
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6
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3.0k
views
problem with GOHyperGParams in package Category
Annotation GO GOstats Category Annotation GO GOstats Category
updated 17.9 years ago by ▴ 570 • written 17.9 years ago by ▴ 830
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4
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1.7k
views
GOstats locked database
GO Cancer GOstats GO Cancer GOstats
18.0 years ago Janet Young ▴ 740
0
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2
replies
2.0k
views
Visualizing GOstats HyperGTest results
GO Visualization GOstats GO Visualization GOstats
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 600
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1
reply
771
views
Questions in GOvis.pdf - a GOStats vignette
GOstats GOstats
updated 18.0 years ago by 25k • written 18.0 years ago by ▴ 600
0
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5
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2.1k
views
understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 18.0 years ago by ▴ 290 • written 18.0 years ago by ▴ 740
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3
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1.4k
views
Odd isolated problem with GOstats
GO limma GOstats GO limma GOstats
updated 18.0 years ago by ★ 7.2k • written 18.0 years ago by ▴ 830
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2
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1.9k
views
biomaRt getBM errors
Annotation GO annotate AnnBuilder GOstats biomaRt Annotation GO annotate AnnBuilder
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 10
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4
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1.5k
views
Rgraphviz, deprecated imageMap
Rgraphviz PROcess GOstats Rgraphviz PROcess GOstats
updated 18.2 years ago by ★ 5.5k • written 18.2 years ago by ▴ 170
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10
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2.3k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 18.2 years ago by ▴ 30 • written 18.2 years ago by ★ 1.1k
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votes
14
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3.6k
views
GOStats/RBGL installation error
RBGL GOstats RBGL GOstats
updated 18.2 years ago by ▴ 170 • written 18.2 years ago by ▴ 260
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4
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2.1k
views
GOstats install error under Linux Debian
GO GOstats GO GOstats
updated 18.3 years ago by ★ 7.2k • written 18.3 years ago by ★ 1.7k
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2
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1.4k
views
GOstats - defining the gene universe
GOstats GOstats
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 20
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2
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1.7k
views
problem with probes2tableBM
Annotation GO Survival hgu133a2 annotate genefilter affy graph gcrma matchprobes GOstats
updated 18.3 years ago by ▴ 500 • written 18.3 years ago by ▴ 510
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10
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2.4k
views
Problem with invalid GO term in HyperGResult object - NOT solved
GO Cancer GOstats affycoretools GO Cancer GOstats affycoretools
updated 18.4 years ago by ★ 2.2k • written 18.4 years ago by ★ 7.4k
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5
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2.2k
views
Measuring similarities beween GO terms graphs
Annotation GO GOstats Annotation GO GOstats
updated 18.4 years ago by ▴ 50 • written 18.4 years ago by ▴ 500
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0
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1.2k
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FDR of enrichment analysis and other questions on GOstats
Cancer GOstats GLAD Cancer GOstats GLAD
18.5 years ago Serge Eifes ▴ 90
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10
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2.7k
views
comparing GO lists
Annotation GO Cancer graph GOstats Annotation GO Cancer graph GOstats
updated 18.5 years ago by ▴ 130 • written 18.5 years ago by ★ 5.5k
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0
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1.2k
views
Input for KS test
Genetics GO GOstats Category topGO Genetics GO GOstats Category topGO
18.5 years ago Ken Termiso ▴ 250
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1
reply
1.4k
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Cancer Ruuid tkWidgets graph GOstats Cancer Ruuid tkWidgets graph GOstats
updated 18.5 years ago by ▴ 10 • written 18.5 years ago by ★ 7.4k
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0
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1.1k
views
Error loading tcltk for tkWidgets and widgetTools on duo Intel Mac under OS X
Ruuid tkWidgets graph GOstats Ruuid tkWidgets graph GOstats
18.5 years ago Michael Parisi ▴ 10
0
votes
7
replies
2.1k
views
Gene Ontology relationships
Cancer GOstats Cancer GOstats
updated 18.6 years ago by ★ 1.4k • written 18.6 years ago by ★ 7.4k
0
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1
reply
799
views
Question about htmlReport() in GOstats package
GO GOstats GO GOstats
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 40
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0
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1.0k
views
problem with hyperGTest function
GO Cancer cdf GOstats GO Cancer cdf GOstats
18.6 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.2k
views
GOstats v2.2.3 . bug in inducedTermGraph
Annotation GO GOstats Annotation GO GOstats
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 10
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5
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2.6k
views
GOstats, geneCounts and gene universe filtering...
GO rat2302 probe GOstats topGO GO rat2302 probe GOstats topGO
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 110
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5
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2.2k
views
AnnBuilder with custmerized GO annotation
Annotation GO GOstats Annotation GO GOstats
updated 18.7 years ago by ▴ 870 • written 18.7 years ago by ▴ 120
0
votes
6
replies
1.9k
views
hyperGTest
GO Cancer GOstats Category GO Cancer GOstats Category
updated 18.7 years ago by ★ 6.0k • written 18.7 years ago by ★ 7.4k
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0
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2.0k
views
GOstats: hyperGTest function
Cancer GOstats Cancer GOstats
18.7 years ago Seth Falcon ★ 7.4k
250 results • Page 4 of 5
Recent ...
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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