Showing : Granges • reset
4
votes
3
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2.8k
views
Overlap the snps
overlap snps granges iranges
updated 11.3 years ago by ★ 11k • written 11.3 years ago by ▴ 10
2
votes
1
reply
1.6k
views
Bioconductor utility with novel projects
Granges IRanges gff import.gff3 strand
updated 11.3 years ago by 16k • written 11.3 years ago by • 0
0
votes
6
replies
7.4k
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GRanges: problem with multiple seqnames and seqlengths
GRanges seqnames seqlengths IRanges
11.3 years ago topher.hamm • 0
3
votes
5
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2.4k
views
Granges and reference genome
granges
updated 11.3 years ago by 21k • written 11.3 years ago by ▴ 290
2
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1
reply
2.7k
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getSeq with GRanges object error: function not found
biostrings bsgenome granges
updated 11.3 years ago by 25k • written 11.3 years ago by ▴ 20
1
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5
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2.0k
views
Coerce several Granges objects to a GrangeList
GRanges GRangesList ChIP
11.3 years ago patrick.schordert ▴ 30
206 results • Page 5 of 5
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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