Bioconductor HTSeq

Showing : HTSeq • reset

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4.4k

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voom htseq edgeR limma RNASeq123

updated 5.3 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

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995

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DESeq2 microRNA HTSeq

16 months ago abhay.kanodia • 0

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1.9k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by sakura.nussbaum ▴ 10

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699

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 17 months ago by Michael Love 41k • written 17 months ago by abhay.kanodia • 0

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696

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DESeq2 htseq DEGseq RNASeq read

updated 18 months ago by Michael Love 41k • written 18 months ago by CP • 0

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544

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DEXSeq HTSeq R

8 months ago • updated 7 months ago yr542 • 0

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1.5k

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DEXSeq dexseq_count htseq

7.2 years ago mat.lesche ▴ 90

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1.1k

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software error HTSeq installation

updated 4.2 years ago by Martin Morgan 25k • written 4.2 years ago by eric33150 • 0

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

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Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

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