Bioconductor IGV

Showing : IGV • reset

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617

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IGV Rsubjunc Rsubread

21 months ago thomas.heigl.ibk • 0

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gviz igv

6.5 years ago ido.idobar • 0

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gviz igv

7.4 years ago ta_awwad ▴ 10

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gviz R IGV

8.4 years ago Deepak Tanwar ▴ 10

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package IGV

updated 9.8 years ago by Paul Shannon ▴ 470 • written 9.8 years ago by Henrik Bengtsson ★ 2.4k

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file format parser IO TDF IGV

9.8 years ago Henrik Bengtsson ★ 2.4k

6 results • Page 1 of 1

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Comment: How can I correctly use phyloseq with Docker? by Suzy • 0

The graphics in [Snow Rider][1] are colorful and charming, adding to the festive atmosphere. [1]: https://snowriderio.io

Comment: GOseq Probability Weight Function bad fit by ejasge.r.m • 0

When performing GO analysis with GOseq, i s important to carefully check your input and assumptions, just like reviewing choices on the McD…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

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Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Commentator to sina.nassiri ▴ 130