Bioconductor IntegerList

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r iranges findoverlaps IntegerList List

9.2 years ago • updated 8.9 years ago jian_liangli • 0

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r iranges integerlist DataFrame

updated 8.9 years ago by Jurat Shahidin ▴ 80 • written 8.9 years ago by jian_liangli • 0

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r iranges integerlist

9.0 years ago Jurat Shahidin ▴ 80

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r s4vectors integerlist iranges

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by jian_liangli • 0

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iranges integerlist s4

9.2 years ago Jurat Shahidin ▴ 80

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s4 coercion iranges integerlist

9.2 years ago jian_liangli • 0

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

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Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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