Bioconductor JASPAR

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2.3k

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pwm tfbstools jaspar

updated 6.6 years ago by Ge Tan ▴ 20 • written 6.6 years ago by chrisclarkson100 ▴ 50

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2.0k

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motifdb JASPAR transcription factor binding site

8.5 years ago Lisa Hopcroft ▴ 40

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1.7k

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rgadem motiv chipseq jaspar

updated 8.9 years ago by emercier • 0 • written 9.0 years ago by w.jarassier • 0

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1.6k

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pwm pfm jaspar motifdb

updated 5.3 years ago by Bioconductor Community 0 • written 5.4 years ago by chrisclarkson100 ▴ 50

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1.3k

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transcription jaspar

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by nia ▴ 30

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1.3k

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tfbstools jaspar

updated 8.6 years ago by Ge Tan ▴ 20 • written 8.6 years ago by JasonLouisStein • 0

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815

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jaspar rsqlite

updated 6.2 years ago by James W. MacDonald 65k • written 6.2 years ago by m.d.shapiro • 0

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790

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pwm motifs jaspar meme motif analysis

5.4 years ago rbronste ▴ 60

8 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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