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rsqlite
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reset
1
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2
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834
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The RSQLite package fails to be installed
RSQLite
org.Hs.eg.db
2.1 years ago
chenghaomai
• 0
0
votes
2
replies
2.1k
views
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’
RSQLite
lumi
2.9 years ago
Rohmatul
• 0
0
votes
2
replies
658
views
trouble accessing JASPAR2018.sqlite
jaspar
rsqlite
updated 5.6 years ago by
James W. MacDonald
63k • written 5.6 years ago by
m.d.shapiro
• 0
2
votes
4
replies
2.9k
views
RSQLite reverse dependencies
R
RSQLite
updated 6.2 years ago by
James W. MacDonald
63k • written 6.2 years ago by
biostR
▴ 10
1
vote
1
reply
1.2k
views
Unable to see reactome.db dbschema
reactome.db
rsqlite
updated 6.7 years ago by
willem.ligtenberg
▴ 150 • written 6.7 years ago by
Lluís Revilla Sancho
▴ 720
0
votes
1
reply
946
views
Problem with RSQLite under R 3.3.2
rsqlite
6.7 years ago
ngrundmann
• 0
0
votes
4
replies
4.4k
views
Problems with RSQLite compilation
rsqlite
bioconductor
bioclite
rcpp.h
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
conkline
• 0
0
votes
5
replies
999
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 7.0 years ago by
James W. MacDonald
63k • written 7.0 years ago by
Vincent J. Carey, Jr.
6.7k
3
votes
2
replies
1.3k
views
Why does requireNamespace("org.Hs.eg.db") load DBI and RSQLite?
org.hs.eg.db
DBI
rsqlite
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Gordon Smyth
48k
0
votes
2
replies
1.9k
views
error in creating custom "org.MeSH.XXX.db" package with MeSHDbi
annotation
annotationdbi
rsqlite
8.5 years ago
Ceca Bojic
▴ 10
3
votes
2
replies
3.1k
views
Cannot install GenomicFeatures package (related to RSQLite version)
biocinstaller
genomicfeatures
rsqlite
updated 8.8 years ago by
Dan Tenenbaum
★ 8.2k • written 8.8 years ago by
vimartin
• 0
0
votes
2
replies
2.1k
views
VariantAnnotation Installation Error RSQLite
VariantAnnotation
RSQLite
8.8 years ago
remi.tournebize
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Answer: Batch effect adjust in model matrix
by
ATpoint
★ 3.4k
Each sample is a different day, that is called "nested", so there is nothing you can do here. Next time do a better experimental design, he…
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
by
Michael Love
40k
Oh, I see. If you can't use counts + offset then I prefer lengthScaledTPM to DESeq2, i.e. `txi$counts` to `DESeqDataSetFromMatrix()`. So …
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
by
Christian
• 0
I´m sorry causing confusion here, but the gene matrices I refer to are actually obtained via https://nf-co.re/rnaseq. The problem with the…
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
by
Michael Love
40k
For the reasons outlined in the Soneson paper, I'd prefer this pipeline: https://nf-co.re/rnaseq You cannot use these scaled TPM approach…
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
by
Christian
• 0
I get your point as we already starting with TPM. This was more to clarify that I understand the principle correctly. However, further I´m…
Votes
batch effect : comBat or blocking in limma ?
Batch correction and repeated measures
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
Answer: Batch correction and repeated measures
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