Bioconductor Tfbstools

Showing : tfbstools • reset

votes

564

views

TFBSTools R forloop

updated 2.1 years ago by onlineclasshelpnow • 0 • written 2.1 years ago by HELEN • 0

votes

replies

519

views

TFBSTools FASTA RStudio

2.1 years ago HELEN • 0

votes

619

views

TFBSTools DNASeqData readFASTA DNA RStudio

updated 2.1 years ago by James W. MacDonald 64k • written 2.1 years ago by HELEN • 0

votes

replies

669

views

error TFBSTools R

2.1 years ago HELEN • 0

votes

replies

528

views

TFBSTools RStudio R

2.1 years ago HELEN • 0

votes

2.1k

views

pwm tfbstools jaspar

updated 6.2 years ago by Ge Tan ▴ 20 • written 6.2 years ago by chrisclarkson100 ▴ 50

vote

1.6k

views

TFBSTools looping PFMatrixList PFMatrix bioconductor

6.6 years ago nathan.lawlor03 • 0

votes

933

views

bioconductor tfbstools

updated 7.1 years ago by Ge Tan ▴ 20 • written 7.1 years ago by laurabuggiotti • 0

votes

1.2k

views

tfbstools jaspar

updated 8.1 years ago by Ge Tan ▴ 20 • written 8.2 years ago by JasonLouisStein • 0

votes

1.2k

views

tfbstools

updated 8.5 years ago by Ge Tan ▴ 20 • written 8.7 years ago by franceskrussell • 0

10 results • Page 1 of 1

Recent ...

Replies

Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Votes

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Awards • All