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JASPAR
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1.7k
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Problem with rGADEM & MotIV - one matrix consensus after GADEM() and one plot enrichment motif
rgadem
motiv
chipseq
jaspar
updated 9.0 years ago by
emercier
• 0 • written 9.0 years ago by
w.jarassier
• 0
2
votes
6
replies
2.0k
views
Identifying TF binding sites (Motifdb + TxDb.Hsapiens.UCSC.hg19.knownGene)
motifdb
JASPAR
transcription factor binding site
8.6 years ago • updated 8.5 years ago
Lisa Hopcroft
▴ 40
0
votes
1
reply
1.3k
views
TF ANALYSIS USING JASPAR
transcription
jaspar
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
nia
▴ 30
0
votes
2
replies
823
views
trouble accessing JASPAR2018.sqlite
jaspar
rsqlite
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
m.d.shapiro
• 0
2
votes
1
reply
2.3k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm
tfbstools
jaspar
updated 6.6 years ago by
Ge Tan
▴ 20 • written 6.7 years ago by
chrisclarkson100
▴ 50
0
votes
1
reply
1.3k
views
TFBSTools access to JASPAR2014 via getMatrixSet()
tfbstools
jaspar
updated 8.6 years ago by
Ge Tan
▴ 20 • written 8.6 years ago by
JasonLouisStein
• 0
2
votes
0
replies
1.6k
views
motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm
pfm
jaspar
motifdb
updated 5.4 years ago by
Bioconductor Community
0 • written 5.5 years ago by
chrisclarkson100
▴ 50
0
votes
0
replies
798
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.5 years ago
rbronste
▴ 60
8 results • Page
1 of 1
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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