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KaryoploteR
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641
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Make custom Txdb class objects from Txdb
GenomicFeatures
karyoploteR
TxDb.Hsapiens.UCSC.hg19.knownGene
19 months ago
Shreyash
▴ 10
9
votes
5
replies
1.8k
views
karyoploteR genome coverage plotting using BSgenome.TAIR10
BSgenome.Athaliana.TAIR.TAIR10.
karyoploteR
BSgenome
updated 2.2 years ago by
James W. MacDonald
67k • written 2.2 years ago by
rtt100
• 0
0
votes
1
reply
1000
views
KaryoploteR: error using galGal6 genome
KaryoploteR
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
mpigozzi
• 0
4
votes
5
replies
3.4k
views
How to add a color legend to plotKaryotype and kpPlotRegions ?
karyoploter
updated 5.2 years ago by
bernatgel
▴ 150 • written 5.2 years ago by
Aditya
▴ 160
0
votes
1
reply
1.1k
views
Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
karyoploteR
updated 5.6 years ago by
bernatgel
▴ 150 • written 5.6 years ago by
saeed Ur Rehman
• 0
0
votes
1
reply
2.1k
views
How to name the custom genome in karyoploteR ?
software error
R
bsgenome
karyoploter
updated 7.1 years ago by
bernatgel
▴ 150 • written 7.1 years ago by
kirannbishwa01
▴ 20
1
vote
2
replies
1.4k
views
KaryoploteR does not work on R.3.3.3
karyoploter
updated 7.2 years ago by
bgel
▴ 10 • written 7.2 years ago by
spr
▴ 10
0
votes
0
replies
1.0k
views
karyoploteR: custom genome axis $latest.plot
KaryoploteR
7.4 years ago
Radek
▴ 90
8 results • Page
1 of 1
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
• 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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