Bioconductor KaryoploteR

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

18 months ago Shreyash ▴ 10

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1.8k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 2.1 years ago by James W. MacDonald 67k • written 2.1 years ago by rtt100 • 0

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986

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KaryoploteR

updated 4.2 years ago by Kevin Blighe ★ 4.0k • written 4.2 years ago by mpigozzi • 0

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3.4k

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karyoploter

updated 5.2 years ago by bernatgel ▴ 150 • written 5.2 years ago by Aditya ▴ 160

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1.1k

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karyoploteR

updated 5.5 years ago by bernatgel ▴ 150 • written 5.5 years ago by saeed Ur Rehman • 0

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2.1k

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software error R bsgenome karyoploter

updated 7.0 years ago by bernatgel ▴ 150 • written 7.0 years ago by kirannbishwa01 ▴ 20

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karyoploter

updated 7.1 years ago by bgel ▴ 10 • written 7.1 years ago by spr ▴ 10

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1.0k

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KaryoploteR

7.3 years ago Radek ▴ 90

8 results • Page 1 of 1

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

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Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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