Bioconductor KaryoploteR

Showing : KaryoploteR • reset

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609

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

11 months ago remi-xavier.coux ▴ 10

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889

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

2.5 years ago Shreyash ▴ 10

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2.3k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by rtt100 • 0

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1.2k

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KaryoploteR

updated 5.2 years ago by Kevin Blighe ★ 4.0k • written 5.2 years ago by mpigozzi • 0

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4.1k

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karyoploter

updated 6.2 years ago by bernatgel ▴ 150 • written 6.2 years ago by Aditya ▴ 160

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1.5k

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karyoploteR

updated 6.5 years ago by bernatgel ▴ 150 • written 6.5 years ago by saeed Ur Rehman • 0

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2.4k

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software error R bsgenome karyoploter

updated 8.0 years ago by bernatgel ▴ 150 • written 8.0 years ago by kirannbishwa01 ▴ 20

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1.7k

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karyoploter

updated 8.1 years ago by bgel ▴ 10 • written 8.1 years ago by spr ▴ 10

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1.2k

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KaryoploteR

8.3 years ago Radek ▴ 90

9 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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