Bioconductor KaryoploteR

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

6 weeks ago remi-xavier.coux ▴ 10

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679

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

21 months ago Shreyash ▴ 10

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1.9k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 2.3 years ago by James W. MacDonald 67k • written 2.3 years ago by rtt100 • 0

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1.0k

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KaryoploteR

updated 4.4 years ago by Kevin Blighe ★ 4.0k • written 4.4 years ago by mpigozzi • 0

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3.5k

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karyoploter

updated 5.4 years ago by bernatgel ▴ 150 • written 5.4 years ago by Aditya ▴ 160

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1.2k

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karyoploteR

updated 5.7 years ago by bernatgel ▴ 150 • written 5.7 years ago by saeed Ur Rehman • 0

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2.2k

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software error R bsgenome karyoploter

updated 7.2 years ago by bernatgel ▴ 150 • written 7.2 years ago by kirannbishwa01 ▴ 20

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1.4k

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karyoploter

updated 7.3 years ago by bgel ▴ 10 • written 7.3 years ago by spr ▴ 10

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1.1k

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KaryoploteR

7.5 years ago Radek ▴ 90

9 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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