Bioconductor KaryoploteR

Showing : KaryoploteR • reset

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431

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

12 months ago Shreyash • 0

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 19 months ago by James W. MacDonald 65k • written 19 months ago by rtt100 • 0

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814

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KaryoploteR

updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by mpigozzi • 0

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2.8k

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karyoploter

updated 4.6 years ago by bernatgel ▴ 150 • written 4.6 years ago by Aditya ▴ 160

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843

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karyoploteR

updated 5.0 years ago by bernatgel ▴ 150 • written 5.0 years ago by saeed Ur Rehman • 0

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1.9k

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software error R bsgenome karyoploter

updated 6.5 years ago by bernatgel ▴ 150 • written 6.5 years ago by kirannbishwa01 ▴ 10

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karyoploter

updated 6.6 years ago by bgel ▴ 10 • written 6.6 years ago by spr ▴ 10

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862

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KaryoploteR

6.8 years ago Radek ▴ 90

8 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

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Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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