Bioconductor Kegg

Showing : Kegg • reset

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2.5k

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KEGG gometh

updated 11 months ago by Aung • 0 • written 13 months ago by pedro-marra ▴ 10

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1.9k

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KEGG clusterProfiler

updated 3 months ago by Guido Hooiveld ★ 3.9k • written 14 months ago by ruiqi.li ▴ 10

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1.8k

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clusterProfiler enrichment KEGG

updated 9 weeks ago by cinzia.spagnoli • 0 • written 22 months ago by AP • 0

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1.5k

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kegg enrichkegg clusterprofiler

updated 4 months ago by EvaLan • 0 • written 5.7 years ago by bekah ▴ 40

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1.4k

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KEGG GAGE NaN R DESeq2

updated 11 months ago by Rob • 0 • written 5.5 years ago by owen.donohoe • 0

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1.3k

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cluster clusterProfiler KEGG

12 months ago • updated 11 months ago ruba-mahmoud • 0

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1.2k

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KEGG limma

written 13 months ago by andrewsm • 0

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1.1k

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pathview kegg KEGG

updated 6 months ago by Benji Bromberg ▴ 20 • written 7 months ago by Mauricio Diego • 0

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1.1k

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KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db

updated 8 months ago by Guido Hooiveld ★ 3.9k • written 8 months ago by Milan ▴ 10

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1.0k

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pathview KEGG Oryza_sativa

10 months ago Jiyoung Lee • 0

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556

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timecourse KEGG DESeq2

updated 10 months ago by Michael Love 41k • written 11 months ago by Fred • 0

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344

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KEGGREST KEGG RNASeq

5 months ago mch • 0

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344

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axolotl KEGG GOstats clusterProfiler

9 months ago georgii.vdovin • 0

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275

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clusterProfiler GenomicDistributionsData KEGG

4 days ago • updated 1 day ago fernanda.backsouza ▴ 10

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235

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enrichKEGG KEGGgraph KEGG

updated 9 weeks ago by Guido Hooiveld ★ 3.9k • written 9 weeks ago by cinzia.spagnoli • 0

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167

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Pathways clusterProfiler gseKEGG KEGG

13 days ago julia_mcdonough • 0

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164

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KEGGREST GenomicDistributionsData KEGGgraph KEGG

updated 3 days ago by Guido Hooiveld ★ 3.9k • written 6 days ago by fernanda.backsouza ▴ 10

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 2 days ago by James W. MacDonald 65k • written 2 days ago by fernanda.backsouza ▴ 10

18 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0