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Guido Hooiveld
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rama
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updated 10 months ago by
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written 10 months ago by
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updated 11 weeks ago by
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7 weeks ago • updated 29 days ago
ruba-mahmoud
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updated 9 weeks ago by
Guido Hooiveld
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written 9 weeks ago by
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updated 7 days ago by
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written 11 days ago by
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Answer: Individual DESeq2 runs versus a single DESeq2 run with contrasts produce differe
by
ATpoint
★
2.9k
Please see the vignette, spitting samples or keeping together is covered there. This was asked many times before, use google or the search …
Comment: Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boun
by
merve.sahn
•
0
I guess you are mixing the NCBI and UCSC annotations. If you are using a custom-edited code to load the annotations, I would recommend clon…
Comment: HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb
by
merve.sahn
•
0
Unfortunately, that seems to be your issue. There is a relevant thread [here](https://groups.google.com/g/3d-genomics/c/hVVTxXpPcxs?pli=1).
Comment: HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM1
by
merve.sahn
•
0
Hi @Gemma-Zhang-326 , the package currently runs only on genomes and versions with UCSC annotations. I will need to issue an update to use …
Answer: Affymetrix analysis Chiptype hgu133plus2hsentrezg.db vs hgu133plus2.db
by
Guido Hooiveld
★
3.6k
I am not familiar with Chipster, but `hgu133plus2hsentrezg.db` refers to the annotation of the Affymetrix HGU133plus2 GeneChip that is base…
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