Bioconductor LIMMA

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limma RNASeq voom

updated 4 days ago by Gordon Smyth 50k • written 4 days ago by taur.vil • 0

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162

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technicalReplicates BatchEffect limma RNASeq

7 days ago • updated 4 days ago catv • 0

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794

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limma

updated 5 days ago by Robert Castelo ★ 3.3k • written 6 days ago by Chris • 0

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122

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limma edgeR RNASeq

updated 7 days ago by Gordon Smyth 50k • written 8 days ago by Shaimaa Gamal • 0

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255

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DNAMethylation limma methylationArrayAnalysis

9 days ago • updated 3 days ago hortense96 • 0

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327

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limmaGUI edgeR limma

updated 11 days ago by Gordon Smyth 50k • written 16 days ago by Simran • 0

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865

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limma

16 days ago • updated 8 days ago Chris • 0

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355

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t.test boxplot limma anova

18 days ago Chris • 0

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149

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limma designmatrix

updated 20 days ago by Gordon Smyth 50k • written 21 days ago by avery • 0

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291

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limma

21 days ago • updated 20 days ago andrea.rodriguez-martinez13 • 0

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417

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limma

updated 22 days ago by Gordon Smyth 50k • written 23 days ago by jari.karppinen • 0

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174

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Voom Limma WGCNA

23 days ago Gimena • 0

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1.8k

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limma

28 days ago • updated 6 days ago Chris • 0

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499

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limma DGEanalysis

updated 29 days ago by Gordon Smyth 50k • written 4 weeks ago by Amit • 0

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829

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Regression limma STATISITICS HPC

updated 22 days ago by Gordon Smyth 50k • written 4 weeks ago by Jitendra ▴ 10

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573

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DESeq2 BatchEffect sva limma

updated 10 days ago by Michael Love 41k • written 6 months ago by Crystal571 • 0

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1.2k

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RUVSeq sva limma

updated 9 days ago by Gordon Smyth 50k • written 7 months ago by Jonathan ▴ 10

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8.8k

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limma batch effect covariates microarray

updated 3 days ago by hortense96 • 0 • written 7.7 years ago by dmcleanuk ▴ 30

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3.1k

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limma limma

updated 24 days ago by Gordon Smyth 50k • written 9.8 years ago by Arvid Sondén ▴ 40

19 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

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