Showing : Lumi • reset
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lumiR Does Not Create lumi Batch
lumi lumi
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 750
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2
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1.1k
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issue with limma?
limma lumi limma lumi
updated 14.0 years ago by 21k • written 14.0 years ago by ▴ 180
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1.2k
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diagnosing problems with processing microarray data using lumi package
Microarray probe PROcess convert lumi Microarray probe PROcess convert lumi
14.0 years ago Juliet Hannah ▴ 360
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4
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1.4k
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MA plots for large number of arrays
affy affyPLM beadarray lumi affy affyPLM beadarray lumi
updated 14.0 years ago by ▴ 740 • written 14.0 years ago by ▴ 360
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1.5k
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lumi: Methylation450 Data Input
lumi lumi
updated 14.0 years ago by ▴ 580 • written 14.0 years ago by ▴ 40
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2
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2.7k
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unable to install lumi package
lumi BiocInstaller lumi BiocInstaller
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 360
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786
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Sample Grouping
lumi lumi
14.1 years ago rajasereddy ▴ 10
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2
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964
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About GEO submission of Illumina data
lumi lumi
updated 14.2 years ago by 21k • written 14.2 years ago by ▴ 20
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857
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About GEO submission of Illumina data by lumi
lumi lumi
14.2 years ago Yu Leng Phua ▴ 20
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1.2k
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lumi, Illumina Methylation 450k, and robust methylation calls
lumi lumi
updated 14.3 years ago by ▴ 270 • written 14.3 years ago by ▴ 10
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1.3k
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adding annotation to illumina data
limma convert lumi limma convert lumi
14.3 years ago Kripa R ▴ 180
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2
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1.3k
views
inconsistent CHR mapping- IlluminaHumanMethylation450k.db
Annotation probe convert lumi Annotation probe convert lumi
updated 14.4 years ago by ▴ 30 • written 14.4 years ago by ▴ 10
0
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2
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1.4k
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memory problem
Normalization lumi methylumi Normalization lumi methylumi
updated 14.4 years ago by ▴ 620 • written 14.4 years ago by 21k
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5
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1.9k
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lumi, Illumina Methylation 450k, and robust methylation calls
lumi lumi
14.4 years ago Pan Du ▴ 440
0
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1
reply
1.3k
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lumi, Illumina Methylation 450k, and robust methylation calls
lumi lumi
updated 14.4 years ago by ▴ 620 • written 14.4 years ago by ▴ 270
0
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1
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770
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methylated and unmethylated function
lumi lumi
updated 14.4 years ago by ★ 4.2k • written 14.4 years ago by ▴ 30
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3
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1.4k
views
lumi and plotHousekeepingGene
Cancer lumi Cancer lumi
updated 14.5 years ago by ▴ 440 • written 14.5 years ago by ▴ 740
0
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9
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2.1k
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Lumi methylation analysis errors in lmFit
Normalization lumi Normalization lumi
updated 14.5 years ago by 21k • written 14.5 years ago by ▴ 100
0
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1.3k
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Chip version of Illumina HT 12 data [ lumi getChipInfo() method ]
Microarray Normalization Cancer Breast lumi Microarray Normalization Cancer Breast lumi
14.5 years ago Md.Mamunur Rashid ▴ 260
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1.2k
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lumi : Problems with the gammaFitEM() and lumiMethyStatus() functions.in lumi
Microarray Cancer lumi Microarray Cancer lumi
14.5 years ago NAIARA GARCÍA ▴ 10
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949
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lumi on 450K question
Genetics lumi Genetics lumi
14.5 years ago Pan Du ▴ 440
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2
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1.3k
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lumi: estimateMethylationBG problem
Annotation Normalization Cancer probe lumi Annotation Normalization Cancer probe lumi
updated 14.5 years ago by ▴ 620 • written 14.5 years ago by ▴ 440
0
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1
reply
879
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Methylation status using lumi
lumi lumi
updated 14.5 years ago by ★ 4.2k • written 14.5 years ago by ▴ 10
0
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0
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915
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gammaFitEM()
Microarray lumi Microarray lumi
14.5 years ago Richard C. McEachin ▴ 10
0
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2
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1.3k
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Reading methylation data using lumi package
lumi lumi
updated 14.6 years ago by 21k • written 14.6 years ago by ▴ 20
0
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5
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2.1k
views
problems installing lumi
lumi lumi
updated 14.6 years ago by ★ 8.2k • written 14.6 years ago by ▴ 620
0
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1
reply
2.0k
views
Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
updated 14.7 years ago by ▴ 80 • written 14.7 years ago by ▴ 620
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1
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1.3k
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Lumi problem of adding control data
probe lumi probe lumi
updated 14.7 years ago by ▴ 370 • written 14.7 years ago by ▴ 80
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0
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803
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Fwd: Lumi problem of adding control data
probe lumi probe lumi
14.7 years ago Pan Du ▴ 80
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3
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1.5k
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Lumi problem
probe lumi probe lumi
14.7 years ago mali salmon ▴ 370
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2
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1.7k
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Lumi: LumiT vst transform error
lumi lumi
updated 14.7 years ago by ★ 1.2k • written 14.7 years ago by ▴ 30
0
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0
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1.1k
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Question regarding background correction in lumi package
Microarray lumi Microarray lumi
14.8 years ago Pan Du ★ 1.2k
0
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3
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1.8k
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Adding Illumina GEO GPL IDs to IlluminaIDMapping?
SystemsBiology lumi SystemsBiology lumi
updated 14.8 years ago by 21k • written 14.8 years ago by ★ 1.2k
0
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1
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2.1k
views
Possible issue with detection p-values in Lumi package
probe limma lumi probe limma lumi
updated 14.9 years ago by ★ 3.6k • written 14.9 years ago by ▴ 20
0
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0
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1.0k
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Merging bioconductor lumi annotations with lumi output
Annotation probe lumi Annotation probe lumi
14.9 years ago Thomas Hampton ▴ 750
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1.0k
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Merging bioconductor lumi annotations with lumi output
Annotation probe lumi Annotation probe lumi
14.9 years ago Pan Du ★ 1.2k
0
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3
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1.3k
views
New Lumi data fails to load via lumiR
Annotation lumi Annotation lumi
updated 14.9 years ago by ▴ 300 • written 14.9 years ago by ▴ 750
0
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0
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1.2k
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Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
14.9 years ago Pan Du ★ 1.2k
0
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1.2k
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Results of QC of Demodata included in the package, HumMeth27QCReport
Normalization lumi methylumi Normalization lumi methylumi
15.0 years ago Francesco Mancuso ▴ 40
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1.1k
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Illumina data analysis using lumi
probe lumi probe lumi
15.0 years ago Pan Du ★ 1.2k
0
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3
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1.6k
views
Processing of Illumina Infinium methylation microarray data using lumi - addColorChannelInfo bug?
lumi lumi
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 140
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0
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1.0k
views
Lumi: problems reading a GenomStudio file
GO lumi GO lumi
15.2 years ago Østensen, Ingrid Helen Garmann ▴ 10
0
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0
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1.5k
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about lumi support for Illumina HT-12 v4
Annotation probe annotate lumi Annotation probe annotate lumi
15.4 years ago Pan Du ★ 1.2k
0
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6
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2.0k
views
Illumina data and GO2heatmap
Annotation lumi Annotation lumi
updated 15.4 years ago by ▴ 480 • written 15.4 years ago by ▴ 70
0
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2
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1.4k
views
annotating lumi
Microarray Annotation Normalization probe annotate lumi Microarray Annotation probe lumi
updated 15.5 years ago by ▴ 80 • written 15.5 years ago by ▴ 90
0
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2
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1.8k
views
help with lumi
Microarray Annotation Normalization probe lumi Microarray Annotation Normalization probe
updated 15.5 years ago by ★ 1.2k • written 15.5 years ago by ▴ 90
0
votes
2
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1.5k
views
help with illumina microarray (DASL)
Microarray Annotation annaffy lumi Microarray Annotation annaffy lumi
updated 15.5 years ago by ★ 1.2k • written 15.5 years ago by ▴ 90
0
votes
2
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2.2k
views
lumi annotation using nuID, missing gene symbols
Annotation probe annotate lumi Annotation probe annotate lumi
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 170
0
votes
3
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1.4k
views
Memory and vector size management on linux 64bit
Microarray lumi Microarray lumi
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ▴ 200
0
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2
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1.0k
views
problem with lumiRatAll.db
Annotation Cancer probe annotate lumi Annotation Cancer probe annotate lumi
updated 15.8 years ago by ▴ 300 • written 15.8 years ago by ▴ 20
243 results • Page 3 of 5
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Comment: After running samtools, the featureCounts command crashed. by surprised.swordtail.tlfy • 0
Hey Rui, that's a tricky error! Kevin's suggestion about the GTF file makes total sense. I've had similar issues with file paths in WSL cau…
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Hey, thanks for the insightful post! I totally get what you mean about the learning process. Sometimes you try a new approach and it just d…
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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