Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
MACS2
•
reset
0
votes
2
replies
835
views
ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
DESeq2
MACS2
17 months ago • updated 16 months ago
vanbelj
▴ 30
0
votes
1
reply
1.8k
views
DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
ChIPSeq
SICER2
DiffBind
MACS2
offtopic
updated 2.9 years ago by
James W. MacDonald
65k • written 2.9 years ago by
Yuan Tian
▴ 270
0
votes
2
replies
1.3k
views
DiffBind consensus peak set
DiffBind
MACS2
updated 3.7 years ago by
Rory Stark
★ 5.1k • written 3.7 years ago by
ep15587
• 0
0
votes
2
replies
1.6k
views
DiffBind peaks input file format
DiffBind
macs2
updated 5.1 years ago by
Rory Stark
★ 5.1k • written 5.2 years ago by
Anna
• 0
0
votes
2
replies
932
views
Binding matrix creation DiffBind after MACS2 peak call
diffbind
macs2
updated 6.0 years ago by
Rory Stark
★ 5.1k • written 6.0 years ago by
Lauma R
▴ 10
1
vote
1
reply
2.2k
views
Importing Chip-Seq Peak MACS2 output (.xls) files into DBA object with Diffbind?
diffbind
macs2
chip-seq
6.4 years ago
chunhong.liu07
▴ 10
2
votes
3
replies
9.2k
views
DiffBind for ATAC-seq
atac-seq
diffbind
macs2
macs
peak finding
updated 7.1 years ago by
BioinfGuru
▴ 30 • written 7.6 years ago by
igor
▴ 40
2
votes
4
replies
4.8k
views
diffbind and macs2 output
diffbind
macs2
updated 8.3 years ago by
Gord Brown
▴ 650 • written 8.3 years ago by
tony
▴ 10
8 results • Page
1 of 1
Recent ...
Replies
Answer: OrgDb for maize
by
James W. MacDonald
65k
``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% snapshotDate(): 2023-10-23 > query(hu…
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
• 0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?" No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences. It…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards
• All
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 30
Popular Question
to
Gordon Smyth
50k
Scholar
to
Peter Hickey
▴ 740
Popular Question
to
sropri
• 0
Locations
• All
Sweden,
1 minute ago
University of Applied Sciences Upper Austria, Hagenberg, Austria,
3 minutes ago
United States,
5 minutes ago
France,
8 minutes ago
Ireland,
8 minutes ago
Traffic: 876 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6