Biostar MSIGDB

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limma romer msigdb

updated 6.7 years ago by James W. MacDonald 60k • written 6.8 years ago by Jon Manning ▴ 40

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1.8k

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clusterprofiler GSEA MSIGDB

updated 4.2 years ago by Guangchuang Yu ★ 1.2k • written 4.2 years ago by thomasjenner333 • 0

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117

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msigdb GSEABase GSVA

updated 8 weeks ago by Robert Castelo ★ 2.9k • written 8 weeks ago by forlani.luca • 0

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885

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category gostats msigdb hypergeometric test

6.8 years ago petyuk ▴ 70

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gseabase msigdb genesetcollection Tutorial

3.9 years ago t.kuilman 170

5 results • Page 1 of 1

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Comment: Italicise by Kevin Blighe 3.5k

Okay, I am guessing that the problem is that you need to update the version of *EnhancedVolcano* to the latest version. Can you try that? T…

Comment: Italicise by Pau • 0

They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…

Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0

Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.

Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

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Answer: DESeq2 how to specify contrast to test difference of differences

Comment: DESeq2 how to specify contrast to test difference of differences

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

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Scholar to Nicole • 0

Teacher to Michael Love 37k