Bioconductor MSIGDB

Showing : MSIGDB • reset

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240

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msigdb gmt GSEA

written 7 weeks ago by Georg • 0

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4.1k

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clusterprofiler GSEA MSIGDB

updated 6.1 years ago by Guangchuang Yu ★ 1.2k • written 6.2 years ago by thomasjenner333 • 0

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1.4k

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limma romer msigdb

updated 8.7 years ago by James W. MacDonald 65k • written 8.7 years ago by Jon Manning ▴ 40

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1.9k

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gseabase msigdb genesetcollection Tutorial

written 5.9 years ago by t.kuilman ▴ 170

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1.2k

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msigdb GSEABase GSVA

updated 2.1 years ago by Robert Castelo ★ 3.3k • written 2.1 years ago by forlani.luca • 0

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661

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ssgsea GSVA biotype proteincoding msigdb

updated 5 months ago by Robert Castelo ★ 3.3k • written 5 months ago by snijesh ▴ 20

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191

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geneset GeneSetEnrichment msigdb

5 weeks ago Seongsu • 0

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1.3k

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category gostats msigdb hypergeometric test

8.8 years ago petyuk ▴ 70

8 results • Page 1 of 1

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Comment: Can't post a question containing code? by NATASHA • 0

did you find a solution? I´m having the same problem

Comment: error by NATASHA • 0

Please ignore, i didnt copy all the scrip

Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>

Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0

Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…