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MicrobiomeData
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Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
14 months ago • updated 12 months ago
abhisek001
• 0
0
votes
3
replies
3.2k
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How to correctly interpret ALDEx2 output - differential abundance testing
MicrobiomeData
ALDEx2
updated 2.5 years ago by
Lucie
• 0 • written 2.8 years ago by
RvH
• 0
1
vote
2
replies
1.5k
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Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData
R
microbiomeutilities
Install
2.6 years ago
abhisek001
• 0
1
vote
0
replies
887
views
News:
Virtual talk “Model Misspecification in Microbiome Studies” by Amy D Willis
MicrobiomeData
Microbiome
2.8 years ago
Levi Waldron
★ 1.1k
2
votes
2
replies
1.1k
views
HMP1-II Metagenomic Data
MicrobiomeData
curatedMetagenomicData
2.8 years ago
Pauline
▴ 20
0
votes
0
replies
1.0k
views
WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network
Transcriptomics
MicrobiomeData
RNASEQ
WCGNA
3.0 years ago
Julieta
• 0
0
votes
1
reply
1.4k
views
Editing Plots Generated Using MicrobiomeAnalyst
MicrobiomeData
microbiome
offtopic
updated 4.2 years ago by
James W. MacDonald
68k • written 4.2 years ago by
gwagz8
• 0
0
votes
1
reply
1.3k
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Adding insect abundance data to SparCC Analysis
sparcc
Microbiome
microbiomeExplorer
MicrobiomeData
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
GlycineMax
• 0
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Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Comment: GO.db and others package Download failure
by
Skyler
• 0
Hi James, Below I have inserted all of my code. I have run r as an administrator and not as an administrator. I have changed my CRANmirror …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
abaed
• 0
Exactly, MDS was computed on logCPM values from `cpm(x, log=TRUE)` after running `calcNormFactors(method="TMMwsp")` on the DGE object. I al…
Answer: GO.db and others package Download failure
by
James W. MacDonald
68k
You didn't get an error. You didn't even get a warning! You simply got a message saying that two (unrelated) packages were not updated. As …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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