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MicrobiomeData
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Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
written 19 months ago by
abhisek001
• 0
0
votes
3
replies
3.6k
views
How to correctly interpret ALDEx2 output - differential abundance testing
MicrobiomeData
ALDEx2
updated 2.8 years ago by
Lucie
• 0 • written 3.2 years ago by
RvH
• 0
1
vote
2
replies
1.7k
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData
R
microbiomeutilities
Install
3.0 years ago
abhisek001
• 0
1
vote
0
replies
998
views
News:
Virtual talk “Model Misspecification in Microbiome Studies” by Amy D Willis
MicrobiomeData
Microbiome
3.1 years ago
Levi Waldron
★ 1.1k
2
votes
2
replies
1.3k
views
HMP1-II Metagenomic Data
MicrobiomeData
curatedMetagenomicData
3.2 years ago • updated 3.1 years ago
Pauline
▴ 20
0
votes
0
replies
1.4k
views
WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network
Transcriptomics
MicrobiomeData
RNASEQ
WCGNA
3.4 years ago
Julieta
• 0
0
votes
1
reply
1.6k
views
Editing Plots Generated Using MicrobiomeAnalyst
MicrobiomeData
microbiome
offtopic
updated 4.5 years ago by
James W. MacDonald
68k • written 4.5 years ago by
gwagz8
• 0
0
votes
1
reply
1.5k
views
Adding insect abundance data to SparCC Analysis
sparcc
Microbiome
microbiomeExplorer
MicrobiomeData
updated 4.6 years ago by
Kevin Blighe
★ 4.0k • written 4.6 years ago by
GlycineMax
• 0
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Answer: Confirm that OpenStats will not be archived (pryr dependency)
by
man
• 0
The best AI-powered image editor <a href='https://nanobananaart.net>[Nano Banana][1]</a> for both image and text in 2025. [1]: http…
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Votes
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
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