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MicrobiomeData
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Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
17 months ago • updated 15 months ago
abhisek001
• 0
0
votes
3
replies
3.3k
views
How to correctly interpret ALDEx2 output - differential abundance testing
MicrobiomeData
ALDEx2
updated 2.7 years ago by
Lucie
• 0 • written 3.0 years ago by
RvH
• 0
1
vote
2
replies
1.6k
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData
R
microbiomeutilities
Install
2.8 years ago
abhisek001
• 0
1
vote
0
replies
961
views
News:
Virtual talk “Model Misspecification in Microbiome Studies” by Amy D Willis
MicrobiomeData
Microbiome
3.0 years ago
Levi Waldron
★ 1.1k
2
votes
2
replies
1.2k
views
HMP1-II Metagenomic Data
MicrobiomeData
curatedMetagenomicData
3.0 years ago
Pauline
▴ 20
0
votes
0
replies
1.2k
views
WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network
Transcriptomics
MicrobiomeData
RNASEQ
WCGNA
3.2 years ago
Julieta
• 0
0
votes
1
reply
1.5k
views
Editing Plots Generated Using MicrobiomeAnalyst
MicrobiomeData
microbiome
offtopic
updated 4.4 years ago by
James W. MacDonald
68k • written 4.4 years ago by
gwagz8
• 0
0
votes
1
reply
1.4k
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Adding insect abundance data to SparCC Analysis
sparcc
Microbiome
microbiomeExplorer
MicrobiomeData
updated 4.4 years ago by
Kevin Blighe
★ 4.0k • written 4.4 years ago by
GlycineMax
• 0
8 results • Page
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Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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