Bioconductor MicrobiomeData

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1.2k

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Metagenomics dada2 MicrobiomeData

16 months ago • updated 14 months ago abhisek001 • 0

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3.3k

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MicrobiomeData ALDEx2

updated 2.6 years ago by Lucie • 0 • written 2.9 years ago by RvH • 0

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MicrobiomeData R microbiomeutilities Install

2.7 years ago abhisek001 • 0

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936

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MicrobiomeData Microbiome

2.9 years ago Levi Waldron ★ 1.1k

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MicrobiomeData curatedMetagenomicData

2.9 years ago Pauline ▴ 20

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Network Transcriptomics MicrobiomeData RNASEQ WCGNA

3.1 years ago Julieta • 0

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MicrobiomeData microbiome offtopic

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by gwagz8 • 0

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sparcc Microbiome microbiomeExplorer MicrobiomeData

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by GlycineMax • 0

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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