Bioconductor MicrobiomeData

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Metagenomics dada2 MicrobiomeData

17 months ago • updated 15 months ago abhisek001 • 0

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MicrobiomeData ALDEx2

updated 2.7 years ago by Lucie • 0 • written 3.0 years ago by RvH • 0

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MicrobiomeData R microbiomeutilities Install

2.8 years ago abhisek001 • 0

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MicrobiomeData Microbiome

3.0 years ago Levi Waldron ★ 1.1k

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MicrobiomeData curatedMetagenomicData

3.0 years ago Pauline ▴ 20

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Network Transcriptomics MicrobiomeData RNASEQ WCGNA

3.2 years ago Julieta • 0

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MicrobiomeData microbiome offtopic

updated 4.4 years ago by James W. MacDonald 68k • written 4.4 years ago by gwagz8 • 0

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sparcc Microbiome microbiomeExplorer MicrobiomeData

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by GlycineMax • 0

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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