Bioconductor MicrobiomeData

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Metagenomics dada2 MicrobiomeData

7 months ago • updated 5 months ago abhisek001 • 0

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MicrobiomeData ALDEx2

updated 22 months ago by Lucie • 0 • written 2.2 years ago by RvH • 0

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MicrobiomeData R microbiomeutilities Install

23 months ago abhisek001 • 0

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MicrobiomeData Microbiome

2.1 years ago Levi Waldron ★ 1.1k

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MicrobiomeData curatedMetagenomicData

2.2 years ago • updated 2.1 years ago Pauline ▴ 20

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Network Transcriptomics MicrobiomeData RNASEQ WCGNA

2.4 years ago Julieta • 0

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MicrobiomeData microbiome offtopic

updated 3.5 years ago by James W. MacDonald 67k • written 3.5 years ago by gwagz8 • 0

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sparcc Microbiome microbiomeExplorer MicrobiomeData

updated 3.6 years ago by Kevin Blighe ★ 4.0k • written 3.6 years ago by GlycineMax • 0

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Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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