Bioconductor Model

Showing : Model • reset

votes

replies

9.0k

views

DESeq2 linear model model

updated 3.0 years ago by Michael Love 42k • written 9.5 years ago by andrew.j.skelton73 ▴ 370

vote

replies

1.5k

views

EdgeR rank model

6.9 years ago philip.freda • 0

votes

replies

2.0k

views

limma dose-response linear model model formula

updated 6.5 years ago by James W. MacDonald 66k • written 6.5 years ago by biominer ▴ 10

votes

replies

2.2k

views

edgeR edger "glmqlftest()" timecourse model

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by heikki.sarin ▴ 10

vote

replies

2.2k

views

limma goodness fit linear model

updated 9.3 years ago by Gordon Smyth 50k • written 9.3 years ago by nonCodingGene ▴ 10

votes

replies

2.3k

views

egdeR multiple time points model.matrix differential exon usage model

6.8 years ago heikki.sarin ▴ 10

vote

replies

1.0k

views

deseq2 interaction model

updated 3.9 years ago by Michael Love 42k • written 3.9 years ago by aec ▴ 90

vote

replies

912

views

Deseq2 model

7.8 years ago jrivera • 0

votes

replies

944

views

diffbind blocking model

updated 3.6 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by melnuesch ▴ 10

votes

replies

1.8k

views

deseq2 experimental design timecourse rnaseq model

updated 7.6 years ago by Michael Love 42k • written 7.6 years ago by athief ▴ 20

votes

replies

966

views

model BatchEffect hidden Design DESeq2

2.6 years ago m.glymenaki • 0

votes

729

views

DESeq2 LRT Model

updated 2.2 years ago by Michael Love 42k • written 2.2 years ago by JaneDoe • 0

votes

3.0k

views

deseq2 model

updated 8.9 years ago by Simon Anders ★ 3.7k • written 8.9 years ago by da.de ▴ 30

vote

1.1k

views

DESeq2 ErrorincheckFullRank(modelMatrix) model

updated 3.5 years ago by Michael Love 42k • written 3.5 years ago by Isabelle • 0

votes

1.4k

views

dexseq rna-seq model.matrix model

updated 6.8 years ago by Michael Love 42k • written 6.8 years ago by heikki.sarin ▴ 10

votes

replies

1.2k

views

dexseq timecourse model.matrix model

6.8 years ago heikki.sarin ▴ 10

16 results • Page 1 of 1

Recent ...

Replies

Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0

Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…

Answer: GSVA function by Robert Castelo ★ 3.3k

Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …

Votes

DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

DESeq2 swap ensembl gene id rownames with gene symbol column

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

DESeq2: add annotations (from data frame) to DESeqDataSet

Add new columns to DESeqResults from text file by matching rownames.

Awards • All

Popular Question to Robert Castelo ★ 3.3k