Bioconductor Model

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703

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DESeq2 LRT Model

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by JaneDoe • 0

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921

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model BatchEffect hidden Design DESeq2

2.5 years ago m.glymenaki • 0

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1.0k

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DESeq2 ErrorincheckFullRank(modelMatrix) model

updated 3.4 years ago by Michael Love 41k • written 3.4 years ago by Isabelle • 0

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921

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diffbind blocking model

updated 3.5 years ago by Rory Stark ★ 5.1k • written 4.5 years ago by melnuesch ▴ 10

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1.0k

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deseq2 interaction model

updated 3.9 years ago by Michael Love 41k • written 3.9 years ago by aec ▴ 90

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1.9k

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limma dose-response linear model model formula

updated 6.4 years ago by James W. MacDonald 65k • written 6.4 years ago by biominer ▴ 10

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2.1k

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edgeR edger "glmqlftest()" timecourse model

updated 6.7 years ago by Ryan C. Thompson ★ 7.9k • written 6.7 years ago by heikki.sarin ▴ 10

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2.3k

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egdeR multiple time points model.matrix differential exon usage model

6.7 years ago heikki.sarin ▴ 10

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1.2k

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dexseq timecourse model.matrix model

6.7 years ago heikki.sarin ▴ 10

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1.4k

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dexseq rna-seq model.matrix model

updated 6.8 years ago by Michael Love 41k • written 6.8 years ago by heikki.sarin ▴ 10

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1.5k

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EdgeR rank model

6.8 years ago philip.freda • 0

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1.8k

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deseq2 experimental design timecourse rnaseq model

updated 7.5 years ago by Michael Love 41k • written 7.5 years ago by athief ▴ 20

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899

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Deseq2 model

7.8 years ago jrivera • 0

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3.0k

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deseq2 model

updated 8.8 years ago by Simon Anders ★ 3.7k • written 8.8 years ago by da.de ▴ 30

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2.1k

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limma goodness fit linear model

updated 9.2 years ago by Gordon Smyth 50k • written 9.2 years ago by nonCodingGene ▴ 10

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8.9k

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DESeq2 linear model model

updated 3.0 years ago by Michael Love 41k • written 9.4 years ago by andrew.j.skelton73 ▴ 370

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Answer: get BM error by James W. MacDonald 65k

The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…

Answer: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…

Comment: Different Shrunk Log2FC according with reference by Michael Love 41k

I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

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Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

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