Showing : experimental design • reset
6
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6
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4.4k
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Limma multi-group analysis - General F-test
limma experimental design
updated 4.1 years ago by 51k • written 4.1 years ago by ▴ 10
0
votes
1
reply
722
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DESeq2 compairson of 3 samples from 1 type
deseq2 multiple factor design contrasts experimental design
updated 5.2 years ago by 42k • written 5.2 years ago by • 0
1
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2
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851
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Call DE genes on Unbalanced design with controls
edger experimental design
5.2 years ago timedreamer ▴ 10
0
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4
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1.0k
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DESeq2 analysis design - different individuals for all samples
deseq2 rnaseq model.matrix experimental design
5.7 years ago Maithê Barros ▴ 10
1
vote
9
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1.7k
views
shRNA-Seq analysis using edgeR
shrnaseq edger experimental design model.matrix
updated 5.7 years ago by ★ 28k • written 5.7 years ago by ★ 1.5k
0
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0
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941
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Job: Postdoctoral Research Fellowship- reinforcement learning in biology- London
job bioinformatician job machine learning gene expression experimental design Job
5.8 years ago dezer ▴ 10
2
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6
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1.2k
views
DESeq2 Gene Expression Set up: Behavior vs Age
deseq2 experimental design
updated 5.8 years ago by 42k • written 5.8 years ago by • 0
4
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2
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1.2k
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How does the function model.matrix (to define experimental design) really works ?
experimental design model.matrix edger
updated 6.3 years ago by ★ 7.9k • written 6.3 years ago by ▴ 20
1
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2
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1.5k
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DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2 model matrix experimental design multiple factor design
updated 6.5 years ago by 42k • written 6.5 years ago by • 0
0
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1
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3.1k
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DESeq2 design model/contrasts question 3 level condition
deseq2 model design differential gene expression experimental design
updated 6.5 years ago by 42k • written 6.5 years ago by • 0
6
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1
reply
11k
views
DESeq2 interaction term in two-factor design, which contrasts?
deseq2 experimental design interaction model
updated 7.0 years ago by 42k • written 7.0 years ago by ▴ 30
1
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2
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4.6k
views
Multiple comparisons for DE analysis with DESeq2
deseq2 mirna-seq experimental design differential expression
updated 7.2 years ago by ▴ 690 • written 7.2 years ago by ▴ 10
1
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2
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1.6k
views
Trying to design a model(s) for a two factor RNA-seq experimental analysis in EdgeR with interaction
EdgeR RNAseq experimental design glm
updated 7.4 years ago by ★ 28k • written 7.4 years ago by • 0
0
votes
1
reply
974
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Genotypic difference design using deseq2
Deseq2 genotype experimental design
updated 7.4 years ago by 42k • written 7.4 years ago by ▴ 90
5
votes
2
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1.9k
views
DESeq2 design matrix for timecourse
deseq2 experimental design timecourse rnaseq model
updated 7.7 years ago by 42k • written 7.7 years ago by ▴ 20
2
votes
2
replies
1.3k
views
EdgeR experimental design matrix
edger differential gene expression experimental design
updated 8.2 years ago by ★ 28k • written 8.2 years ago by • 0
6
votes
1
reply
2.5k
views
DESeq2, difficulties with multi-factor design
DESeq2 multiple factor design experimental design contrast
updated 8.7 years ago by 42k • written 8.7 years ago by ▴ 60
5
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7
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2.1k
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what conditions affect my gene (with limma?)
limma geo experimental design
updated 8.9 years ago by 51k • written 8.9 years ago by • 0
4
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3
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3.0k
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DESeq2 - design for TCGA level 3 data
deseq2 tcga experimental design multiple factor design
updated 9.2 years ago by 42k • written 9.2 years ago by ▴ 40
1
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2
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1.7k
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qRT-PCR Sample Maximization software analysis and proper experimental design advice
qPCR Sample Maximization Analysis Experimental Design qRT-PCR
updated 9.2 years ago by 51k • written 9.3 years ago by ▴ 450
0
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4
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2.0k
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Question: DESeq2 nested design, multifactor test
deseq2 experimental design
9.2 years ago Shucong Li ▴ 60
21 results • Page 1 of 1
Recent ...
Replies
Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Scholar to Michael Love 42k
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