Bioconductor Multiple sequence alignment

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MSA R Multiple sequence alignment consensus sequence

updated 5.8 years ago by ulrich.bodenhofer ▴ 20 • written 5.8 years ago by Yuchen Chang • 0

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snp multiple sequence alignment fasta Tutorial

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by pltbiotech_tkarthi • 0

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msa msaprettyprint() multiple sequence alignment

8.0 years ago map2085 ▴ 40

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> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

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The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

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> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

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Comment: Weird p-values using DESeq2?

Answer: Store Matrix in DataFrame Cell

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