Bioconductor Multiple sequence alignment

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MSA R Multiple sequence alignment consensus sequence

updated 6.6 years ago by ulrich.bodenhofer ▴ 20 • written 6.6 years ago by Yuchen Chang • 0

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snp multiple sequence alignment fasta Tutorial

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by pltbiotech_tkarthi • 0

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msa msaprettyprint() multiple sequence alignment

8.8 years ago map2085 ▴ 40

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

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